Gordonia alkanivorans: C5O27_00125
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Entry
C5O27_00125 CDS
T05876
Name
(GenBank) ATP-dependent DNA helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
gav
Gordonia alkanivorans
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_00125
Enzymes [BR:
gav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C5O27_00125
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
C5O27_00125
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AZZ79703
LinkDB
All DBs
Position
complement(25503..28745)
Genome browser
AA seq
1080 aa
AA seq
DB search
MTAAQLADQAARDRITTDTDATLFVEAGAGSGKTHSLVGRICHLVLHDGIELDAIAAITF
TEKAAAELRERVRVELATHDTDRARAALEQIDTAAIGTLHAFAARIIGEHPLEAGVPPRI
AVVDAMGSQLSFERRWRRMRTRLFTDDASPMLVDAMGIVMAAGASLDQMRTLADALDRNW
DRLTLDDDPQGIAPADIDRILWETDTIIDKLDDCLDPEDKLAVKLEELREWRILVAAERD
SFGWVPMVDLCPKLGNVGRGSAWRGGVAQCKEIKAAAKALREEICSDVVGTYVDGAVRVV
VRHLSEIVLDEARERQRSGQLEFHDLLVLARDVLGKPEVAAAAHRRYQRVLLDEFQDTDP
LQLTLAQRIVAGRDEAGRLFTVGDPKQSIYRFRRADIAAYMSARDRTPPADVVQLTTNFR
STRPVLDWVNAVYGRLIVAEHHVQPDYTPLDPAPGRPRWDVSWGPKPFVFPDTEEPVDDE
DALSPAEALRARESRDVARIIATAVEIGWRKETFDGDAYEHVPLRWKDICILIPSRAVLP
FLEKSLDAAGIEFRSEASSLVYSTQEVHDLLVTCRALANTADEAALVAALRTPLFGCGDD
DLLRWKAADGRWSIYADAPTDALTESPVAAACAYLKALSSELGDLNPGALLSRLATDRRV
FEVSMDSPRHRDVWRRLRFVIDQARAWYAEDRGSLRDYIDWAATQADENARVAETVLPEI
GVDAVRIMTIHAAKGLQFPMVVVAGMSGGFRTQPEPLLWDEDEKLQACASKNVASKGYAA
AAKTEKAHAEAEKKRLLYVACTRAESHLAVSGYVGKNASWGAALAPALEGLPNDVPELVE
PVRRDDEAIAQHERQAWVDWSAETAAIETASTLRVSYSATRIVHGVDDAETVVLQGYRDS
GRLTAPVAEQIPVGTASPDSGATLGTALHALLEQVALGTAVDDEFDETARRAAALAGVVD
VDHFVALARSALQSAPVQRAAVREHWKEMQLAGPGPDGATVVEGIADLVYRDDDGSLVIV
DYKTDVGVSAETLEAYWAQLAIYADLLRNATGEKVSRLQLVFCRPGQAAVVERALRPADR
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcagcacaactcgccgaccaggccgcgcgcgatcgcatcaccaccgacaccgac
gccaccctgttcgtcgaagccggcgccggcagcggcaaaacccattcgctggtcggccgc
atctgtcacctcgtgctgcacgacggcatcgaactcgacgccatcgccgccatcaccttc
accgagaaagccgcggccgaactccgtgaacgcgtgcgtgtcgagctcgccacacacgac
accgaccgtgcgcgagccgctctggaacagatcgacaccgccgccatcggtacgctgcac
gcgttcgcagcccgcatcatcggcgagcatcccctcgaagccggtgtgccaccacgcatc
gcggtcgtcgacgccatgggctcccagctgtccttcgaacgccgctggcgtcgcatgcgc
acccgactgttcaccgacgacgcctcacccatgctggtcgacgccatgggcatcgtgatg
gccgccggcgcatcgctcgaccagatgcgcacactcgccgacgcattggaccgcaactgg
gatcgcctcaccctcgacgacgatccgcagggcatcgcacccgccgacatcgaccgcatc
ctgtgggagaccgacaccatcatcgacaagctcgacgattgtctcgatccggaggacaaa
ctcgcggtcaaactcgaggaactccgcgaatggcggatcctggttgccgccgaacgtgat
tccttcggatgggtcccgatggtggacctgtgcccgaagctcggcaacgtgggtcggggg
tccgcgtggcgcggtggtgtggcgcagtgcaaagagatcaaagccgccgccaaggcgctg
cgcgaggagatctgctccgacgtggtcggcacctacgtcgacggcgcggtgcgcgtggtg
gtccgccacctgtcggagatcgtcctcgacgaggcgcgcgagcggcaacgcagcggacag
ctcgaattccacgacctgctcgtcctggcccgcgacgtactcggaaagccggaggtcgcc
gcagccgcccatcggcgctaccagcgagtcctcctcgacgagttccaggacaccgatccg
ctgcaactcacactggcacaacgcatcgtcgccggtcgagacgaagccggtcggctcttc
accgtcggcgacccgaaacaatccatctaccgcttccgccgcgccgacattgcggcgtac
atgtccgcgcgggatcgcacgccgccggccgacgtcgtgcagctgaccaccaacttccgg
tccacgcgtcccgtcctcgactgggtcaacgccgtctacggccggctcatcgtcgccgag
catcacgtgcagcccgactacacgccgctcgacccggccccgggccgaccccgctgggac
gtctcctgggggcccaagccgttcgtcttccccgacaccgaggaacccgtcgacgacgag
gacgcgctctcgcccgccgaagccctccgcgcacgcgagtcgcgcgacgtcgcgaggatc
atcgccaccgccgtcgagatcggctggcgcaaggagacattcgatggcgatgcgtatgag
catgtcccattgcgctggaaggacatctgcatcctcatcccgtcgcgggcggtactgccg
ttcctggagaagagcctcgacgccgcgggtatcgagttccgttcggaggcatcgagtctg
gtgtactcgacgcaagaggtgcacgacctcctcgtcacctgccgcgcactcgcgaacacc
gccgacgaagccgcacttgtcgccgccctccgcaccccgctgttcggctgcggtgacgac
gacctactccgctggaaggccgccgacggccgatggagcatctacgccgatgcgcccacc
gacgcgctcaccgaatcgccggtggcggccgcatgtgcatacctgaaggcgctgtcttcg
gaactgggggacctgaacccgggcgcactgctgagccgcctggcgacggatcgtcgggtg
ttcgaggtgtccatggattcgccccgtcaccgcgacgtctggcggcgtctccgcttcgtc
atcgaccaggcccgcgcctggtacgccgaagaccgtggctcactgcgcgactacatcgac
tgggccgccacccaggccgacgagaacgcgcgcgttgccgagaccgtgctccccgagatc
ggcgtcgacgccgtgcgcatcatgaccatccacgccgccaagggattgcagttcccgatg
gtcgtcgtcgccggcatgagcggcggattccgcacccagcccgaaccgctgctgtgggac
gaggacgagaagctgcaggcatgtgcgtcgaagaacgtggcgtcgaaagggtatgcggca
gcagcaaagaccgaaaaggcgcacgccgaggcggagaagaagcgcctgttgtacgtcgcc
tgcacgcgcgccgagagtcacctcgcggtctccggatacgtcgggaagaacgcatcctgg
ggagccgcgctcgcacccgcgctggagggtttgcccaacgacgttccggagctcgtcgaa
ccggtcaggcgcgacgacgaagcgatcgcccagcacgaacgacaggcctgggtcgactgg
tcggcggagaccgctgcgatcgagaccgcttcgacgctccgcgtctcctactcggcgacg
cggatcgtccatggcgtcgatgacgccgaaacagttgtgctgcaggggtaccgggattcc
ggacggctgacagcgccggtagccgaacagatcccggtcggcaccgcgagccccgacagc
ggcgcgacgctgggtaccgccctgcacgcgctcctcgaacaggtggccctgggaaccgcc
gtcgacgacgaattcgacgagaccgcccggcgtgcggccgcactcgccggcgtggtcgac
gtggatcatttcgtggcgctggcgcggtcggcgttgcagtcagcaccggttcagcgagct
gccgtccgcgagcactggaaggaaatgcagctcgccggtcctggacccgacggtgccact
gtggtcgagggcatcgcggacctggtgtaccgcgacgacgacggttcgttggtcatcgtc
gactacaaaaccgacgtcggagtttccgccgaaaccctcgaggcgtactgggcgcaactc
gcgatatacgccgatctactgcgaaatgcgactggggagaaagtgtctcggctacagctc
gtgttttgccggccagggcaggcggcggtcgtcgaacgtgctctgcgcccggcggaccga
tga
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