Gordonia alkanivorans: C5O27_04440
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Entry
C5O27_04440 CDS
T05876
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gav
Gordonia alkanivorans
Pathway
gav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5O27_04440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gav03019
]
C5O27_04440
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_04440
Enzymes [BR:
gav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C5O27_04440
Messenger RNA biogenesis [BR:
gav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C5O27_04440
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C5O27_04440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
PcrA_UvrD_tudor
MarR_2
LexA_DNA_bind
ResIII
Fe_dep_repress
HTH_11
DprA_WH
Motif
Other DBs
NCBI-ProteinID:
AZZ80428
LinkDB
All DBs
Position
967713..969398
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AA seq
561 aa
AA seq
DB search
MTESITERRRAELRRIAREDFGWTVLRPGLIEAMEPLLDGRDVLAAMRTGYGKSAIYQVA
GAMLDGITLVISPLIALQHDQVAGISAADDAPIAVALNSALGPRALTRAWNLVDAGGAEY
VFVAPEQLAKAEVVDRLRDAGVSLVVIDEAHCIAAWGHDFRPDYLRLGATIYGLAAPRSP
RPPILALTATASPPVRDEIVAELRMREPVVVASGFDRPNLRLEVRRAARAMDKRRALIAR
VTELDGCGLVYVSTQRAAMEYASALRGRGIRAAGYHGGLRAADRSQVHRDFRAGEIDVVV
ATSAFGMGIDKHDIRFVVHESVPDSLDDYYQQIGRGGRDGDPALALLFYRPEDLALRRFF
AGRHPVENVLRRVFAAIPPHGEPITVRDLSRRLDLRTRTLINSLNLLEQAGAVQSGPDGY
LVGETTADDAVAGAVHAADVGARMDTSRVEMMRGYAETADCRRRFLLGYFGEHRVGACGN
CDNCLTDVAPPSAIFDPDAPFPLDHRVRHRRWGEGVVVRVEPDRVTVLFDEHGYRTLSLD
AVERSNVLRVDEGAPRVPDEE
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatcgatcaccgaacgccgtcgtgcggaactgcggcggatcgcccgcgaggac
ttcggctggaccgtgctgcgaccagggctgatcgaggcgatggagccgctcctcgacggc
cgcgacgtgctggcggcgatgcgcaccggatacggcaaatcggcgatctatcaggtggcc
ggcgccatgctcgacgggatcaccctcgtcatctccccgttgatcgcgctgcagcacgac
caggtggccgggatctccgccgccgacgacgcacctatcgcggtcgccctcaactccgcg
ctcggcccgcgggcgctgacccgtgcctggaacctcgtggacgccgggggcgccgagtac
gtgttcgtcgcacccgaacagttggcgaaggccgaggtggtcgatcgtctccgcgatgcg
ggcgtgtcgctggtcgtgatcgacgaggcacactgcatcgccgcgtggggccacgacttc
cgtcccgactacttgcgtctgggtgcgacgatctacggcctggcggcgccgaggtcgcct
cgcccgccgatcctggcactgacggcgacggcgtcgcccccggtccgggacgagatcgtc
gccgaactgcgcatgcgggaaccagttgtcgtggcgagcgggttcgaccgtccgaacctc
cgactcgaggttcgacgagccgcccgcgccatggacaagcgtcgcgcactgatcgctcgt
gtcaccgagctcgacggatgcggtctggtctacgtctccactcagcgcgcggcgatggag
tacgcatcggctttgcggggccgcgggatccgcgccgccgggtaccacgggggtctgcgc
gcggccgaccggtctcaggtgcatcgtgatttccgcgccggcgagatcgacgtggtggtg
gcgacgtcggcgttcgggatgggcatcgacaagcacgacatccggttcgtcgtccacgaa
tcggtgccggattcgctggacgactactaccaacagatcgggcgtgggggccgcgacggc
gacccggcacttgcccttctgttctatcggcccgaggatctggcactgcggcgattcttc
gccggtcggcatcccgtggagaacgtgctccgccgcgtgttcgcggccatccccccgcac
ggtgagccgatcacggtgcgcgacctgagtcgacgactcgacctccggacacgcaccctg
atcaactccctgaacctcctcgagcaggccggcgcagtgcagtccggacccgacggatac
ctggtcggtgagacgaccgcggacgacgcagtcgccggcgcggtgcatgccgccgacgtc
ggggcccgaatggacacctcccgggtggagatgatgcgcggctacgccgagaccgccgac
tgccgacgccgcttcctgctcggctacttcggcgaacaccgcgtgggcgcctgcggcaac
tgcgacaactgcctgacggatgtggcgccaccctcggcgatcttcgaccccgatgcgccg
ttcccactcgatcaccgtgtccgtcaccgacgctggggagagggcgtggtggtccgcgtc
gaaccggaccgggtgaccgtgctcttcgacgagcacggttatcgcacgctgtcgctcgac
gccgtggagcgctcgaatgtgcttcgcgtcgacgaaggtgctccgcgtgtccccgacgag
gaatga
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