Gordonia alkanivorans: C5O27_05900
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Entry
C5O27_05900 CDS
T05876
Name
(GenBank) Ku protein
KO
K10979
DNA end-binding protein Ku
Organism
gav
Gordonia alkanivorans
Pathway
gav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C5O27_05900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_05900
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C5O27_05900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
HC2
TFIIF_alpha
Motif
Other DBs
NCBI-ProteinID:
AZZ80665
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All DBs
Position
1286587..1287573
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AA seq
328 aa
AA seq
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MFDMRSIWKGDLSFGLVNVPVKVYSATESHDRKSYQVDSSDGTRIRYRRVREGTDTEVDY
SDIANAYESESGETVILTKDDLATLPVQKSPEISILEFVPAEQVDPIYFDKPYYLEPSSK
SPKAYVLLAKALEETDRLAIATFTLRNRTRVAALRVVDGVMTLQTLLWPDEVRKPDFGFL
DEDTEIRDQELKMAASLIESMASDYDPSEFEDRYQEELSKLIEAKAEGSEAFPESDEEKP
EEEDSEVADLLAALRASVKDRGSSSDEDEGEAEKKDTAAKAPAKKAAKKAPAKKAPAKKA
ASKSSSGSSGSKSTAKKAPAKKASRKAS
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacatgcgctcgatctggaagggcgatctcagctttggtctggtgaacgtaccg
gtcaaggtctattccgcgacggagagtcacgaccgcaagtcgtatcaggtcgactcctcc
gacgggacccgcatccgctaccgccgggtgcgcgagggaaccgacaccgaggtcgactac
tccgacatcgccaacgcctacgagtcggaatcgggcgagacggtgatcctgacgaaggac
gacctggccacgctgcccgtgcagaagagcccggagatctcgatcctggagttcgtgccg
gccgaacaggtcgacccgatctacttcgacaagccgtattacctggagccgtcgtcgaag
tcgcccaaggcctacgtgttgctggccaaggccctcgaggagaccgatcgcctcgccatc
gcgacgttcaccctgcgcaaccgcacgcgggtggcggcgttgcgggtcgtcgacggggtg
atgacgctgcagaccctgttgtggccggacgaggttcgcaaacccgacttcggcttcctc
gacgaggacaccgagatccgcgatcaggaactgaagatggcggcctcgctgatcgagtcg
atggcctccgactacgacccgtccgaattcgaggaccggtaccaggaggaactgtccaag
ctgatcgaggcgaaggccgagggcagcgaggcgttcccggagtcggacgaggagaagccc
gaggaggaggactccgaggtcgccgatctgcttgccgccctgcgtgcctcggtgaaggat
cgtggctcctcctctgacgaggacgagggcgaggcggagaagaaggacacggccgcgaag
gctccggcgaagaaggccgccaagaaggcgcccgcgaagaaggcgccggccaagaaggcg
gcgtcgaagagcagctctggatcgtcgggcagcaagagcacggcgaagaaggcgcccgcc
aagaaggcctcccgtaaggccagctga
DBGET
integrated database retrieval system
