Gordonia alkanivorans: C5O27_12585
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Entry
C5O27_12585 CDS
T05876
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gav
Gordonia alkanivorans
Pathway
gav03030
DNA replication
gav03430
Mismatch repair
gav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C5O27_12585
03430 Mismatch repair
C5O27_12585
03440 Homologous recombination
C5O27_12585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gav03032
]
C5O27_12585
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_12585
Enzymes [BR:
gav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C5O27_12585
DNA replication proteins [BR:
gav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C5O27_12585
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C5O27_12585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AZZ81808
LinkDB
All DBs
Position
2772824..2776366
Genome browser
AA seq
1180 aa
AA seq
DB search
MTDSFVHLHNHTEYSMLDGAAKVSPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAIKND
IKPIIGIEAYIAPGSRFDTKRVQWGSREQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWSRMDADLIAEYAEGIIATTGCPSGEVQTRLRLGHDREALEAAAKWQEI
FGKENFYLELMEHGLEIERRVRDGLLDIGRKLGIKPIVTNDCHYVTKEHAAAHEALLCVQ
TGKTLSDPTRFKFDGDGYYLKSAAEMREQWDSVVPGACDNTLEIGERVQSYKEVFTHRDR
MPVFPVPDGETQQTFLRKEVAKGLRERRFAGTEVPQEYLDRANYELDVIIQMGFPAYFLV
VGDLIRHALEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNPERVSMPDID
IDFDDRRRGEMVRYATERWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADRITK
ALPPPIMAKDIPVWGITNPEHERYGEATEVRTLIETDPDVKKIYDTALGLEGLIRNAGVH
ACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALEN
IKLNRGIDLDLDSLPLEDEKTYELLARGDTLGVFQLDGAAMRELLKMMQPTGFEDIVAVL
ALYRPGPMGVNAHTDYAKRKNGLQEIRPIHPELEEPLKEILSETYGLIVYQEQIMQIAQK
VAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRNNGFSQAAITALWDTVLPFAGYAF
NKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKLGITVLPPDV
NESQRNFAAVGADIRFGLAAIRNVGSGVVGSIINAREEKGKFTSFSDYLGKIDVTACNKK
VTESLIKAGAFDSLGHPRKGLFLVHAEAVESVIGTKKAEAIGQFDLFGDAGGADDSMAEV
FAVKVPEEEWDTKHKLAIEREMLGLYVSGHPLAGVEHAIAAHTDTSITSLLEGNISDGAQ
ITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFPRAYVAYGMDIVADNIVLIKAR
VNLREDSMMISANDLAVPDLETAGATKPVALTLSARLCTPDRVQALKQVLTRHPGMADVH
VTLVSDKRQTQLKLTESLRVAPSSALMGDLKALLGPSCLG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgacggactcgtttgttcacctgcacaaccacaccgagtactcgatgctcgacggtgcg
gccaaggtgtcaccgttgttcgccgaggccaaacggctgggcatgaccgcgatcggcatg
accgaccacgggaacatgttcggtgccagcgagttctacaacaccgcgatcaagaacgac
atcaagccgatcatcggtatcgaggcctacatcgcacccggttcgcggttcgacaccaaa
cgtgtccagtggggttcgcgcgaacagaagagcgacgacgtctcgggttcgggtgcctac
acgcacatgacgatggtcgccgagaacgcgaccggtctgcggaacctgttcaagctgtcc
tcgctcgcctccatcgaggggcagctcggcaagtggtcccgtatggacgccgacctgatc
gccgaatacgccgagggcatcatcgcgaccaccggctgcccgtcgggtgaggtgcagacc
cgtctgcgcctgggtcacgaccgcgaagccctcgaggccgcggcgaagtggcaggagatc
ttcggcaaggagaacttctacctcgagctgatggagcacggcctcgagatcgagcgccgc
gtgcgcgacggtctcctcgacatcggccgcaagctcggcatcaagccgatcgtcaccaac
gactgccactacgtcaccaaggagcatgccgccgcccacgaggcgctgctgtgcgtgcag
accggcaagactctgtccgaccccacccgcttcaagttcgacggcgacggctactacctg
aagtcggccgcggaaatgcgcgagcagtgggactcggtggtcccgggcgcatgtgacaac
acgctcgagatcggcgagcgcgtccagtcctacaaagaagtcttcacccaccgcgaccgc
atgccggtcttcccggtgcccgacggcgagacccagcagaccttcctgcgcaaggaggtc
gcgaagggtctccgggagcgtcgtttcgccggtaccgaggtgccgcaggagtacctcgat
cgcgccaactacgagctcgacgtcatcatccagatgggtttcccggcctacttcctggtg
gtcggcgacctgatccgccacgccctcgaggtcggcatccgcgtcggcccgggccgtggt
tcggcggccggttcgctcgtcgcctgggcgctgggcatcaccaacatcgaccccatcccg
cacggactgctgttcgagcgattcctcaaccccgagcgtgtgtcgatgcccgatatcgac
atcgacttcgacgaccgccgtcgtggcgagatggtccgctacgcgaccgagcggtggggc
agcgacaaggtcgcccaggtcatcaccttcggaaccatcaagaccaaggccgccatcaag
gactccgcccgagtccagttcggccagccgggtttcgcgatcgccgaccgcatcaccaag
gcgttgccgccgcccatcatggccaaggacatcccggtctggggcatcaccaaccccgag
cacgagcgctatggcgaggccaccgaggtccgcacgctcatcgagaccgacccggatgtc
aagaagatctacgacacggcactcggcctcgagggcctgatccgcaacgccggtgtccac
gcctgtgccgtgatcatgtcgtcggagccgctgaccgacgcgatcccggtgtggaaacgt
gcgcaggacggcgcgatcatcaccggctgggactacccgtcgtgcgaggccatcggcctg
ctgaagatggacttcctgggtctgcgcaacctcaccgtcatcggtgacgccctggagaac
atcaagctcaaccgcgggatcgacctggacctcgactcgctgccgctggaggacgagaag
acctacgagctgctcgcccgcggcgacacgctcggcgtgttccagctcgacggcgcggcc
atgcgcgaactcctgaagatgatgcagcccaccgggttcgaggacatcgtcgccgtcctg
gcgctgtaccgacccggtccgatgggtgtgaacgcccacaccgactacgccaagcgcaag
aacggtctccaggagatccggccgatccacccggagctcgaggagccgctgaaggagatc
ctctccgagacctacggtctgatcgtctaccaagagcagatcatgcagatcgcgcagaag
gtcgccgggtactcgctcggacaagcagacctgctccgtcgcgcgatgggcaagaagaag
aaggagatcctcgacgaggcctacgacggcttcgcggagggtatgcgcaacaacggcttc
tcgcaggcggcgatcaccgccctgtgggacacggtgttgccgttcgccggctacgcgttc
aacaaatcgcacgccgcgggctacggtctcgtctccttctggaccgcctacctgaaggcg
aactatcccgccgagtacatggccggtctgctcacctcggtcggcgacgacaaggacaag
gcggcgatctacctcgccgactgccgcaagctcggtatcaccgtcctcccgccggacgtc
aacgagtcgcagcgcaacttcgcggccgtcggtgccgacatccgcttcggtctcgccgcc
atccgcaacgtcgggtcgggcgtcgtcgggtcgatcatcaacgcgcgcgaggagaagggg
aagttcaccagcttctccgactacctcggcaagatcgatgtcaccgcctgcaacaagaag
gtgacggaatcgctgatcaaggcgggcgccttcgactctctcggccatccgcgcaagggc
ttgttcctcgtgcacgccgaagccgtcgaatcggtgatcggcaccaagaaggccgaggcg
atcggacagttcgacctcttcggcgatgccggcggagccgacgactcgatggccgaggtc
ttcgccgtcaaggtccccgaggaggagtgggacaccaagcacaagctcgcgatcgagcgg
gagatgctgggcctctacgtctccgggcatccgctggccggcgtcgaacacgccatcgcc
gcgcacaccgacacctcgatcacgtcgctgctggaaggcaacatctccgacggtgcgcag
atcacgatcggcggcatcatctcgtcggtgacgcgccgggtgaacaagaagggcgagccg
tgggccgcggtcaccctcgaagacatggtcggtggtgtcgaggtctacttcttcccgcgc
gcctacgtcgcgtacgggatggacatcgtggccgacaacatcgtgctgatcaaggcccgc
gtgaacctgcgcgaagacagcatgatgatctccgccaacgacctcgccgtccccgacctg
gagaccgccggcgcgaccaagccggtcgcactcacgctgtccgcccgactctgcaccccg
gatcgggtgcaggcgctcaagcaggtgctgacccgacatccgggtatggccgacgtgcac
gtcacgctggtcagcgacaagcggcagacgcagctcaagctgaccgagtccctgcgggtc
gcgccgagttccgcgctgatgggcgacctgaaagcactgctcggacccagttgtctgggc
tga
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