Gordonia alkanivorans: C5O27_13085
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Entry
C5O27_13085 CDS
T05876
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gav
Gordonia alkanivorans
Pathway
gav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5O27_13085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gav03019
]
C5O27_13085
03009 Ribosome biogenesis [BR:
gav03009
]
C5O27_13085
Enzymes [BR:
gav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C5O27_13085
Messenger RNA biogenesis [BR:
gav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C5O27_13085
Ribosome biogenesis [BR:
gav03009
]
Prokaryotic type
rRNA processing factors
C5O27_13085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
AZZ81886
LinkDB
All DBs
Position
2884451..2887822
Genome browser
AA seq
1123 aa
AA seq
DB search
MTDNGSPADANAAPEPVEEFPSKLRVHALARFLGLTSRQVLAHLANLGVQTRSPQSSVDR
ELAQAVAERVRANVDADEPGVTPAAAEEVAPEAAADVAATTAEPVAEEPAAQEPAPEAEA
PKADEPPSLFSAASTRYDEPVATPAAESDASYGTQPLFLQPQAPADKPKATRAAKQAEKT
EQVDKPAKADDSDKPEVASSTDADSGATTQEAKAPETKVAETKIAETKAPEAETVDSDVS
DETGAENTDSSDSESGDNSDTDDSGSGRSRRRRRGRRGRGRGRGDQGGDGESGDASDDDD
TDDTDDKAEDTTPDVDSSTESGETTTDEAADDSKSDEPTSRRRRRRRSGSDTSEEADRKD
SASDDSSKGESKDDDSDDDSDDNDDESGDDSGEASSTRRRRRRRRRKGGGEPDEGSPDDP
PNTVVHEREPRSKRARDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPILTESEFLARREA
VDRVMVVRERSANSSITDSDGHDHAAVEDYTQVAVLEDGVLVEHFVTTATSSSMVGNIYL
GRVQNVLPGMEAAFVDIGRGRNGVLYAGEVNWDAAGLDGGSRKIEQALKPGDHVLVQVSK
DPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDVERKRLKQILSKLVPEDAGVII
RTASEGVSAEELGADIARLEAKWKSIEESVESVKKSGSGAPKALYEEPDLLVRVVRDLFN
EDFKKLVVEGDKAWNLVEGYVSSVAPDLMERVEKFSKPHADAPDSFVVHRIDEQLAKALD
RKVWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDI
GGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEA
FSTPCTSCGGRGLIVHANPVEVRGDDSAKSDGAGSKRSRRGKKKSEAPAEVAAPKAAPPA
IPPHKPAAEHPLFRAMAANHHDDEHPEGEHHEGEHVEVEQAVATAAETPPETEPAQAQEP
TRADEPTKADEPTKVEEPAEAAEPAASTDGQAPAAKRRRRVVRRPAQTTTAPENVVMTAV
DAAPEAPKTTFGPVSTGEPVVAVRRRPRKRTAGRPAGPPPAES
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaacgggtcaccggctgacgcgaacgcagcgccagaaccggtggaagaattt
cccagcaaacttcgtgtgcacgcactggcccgcttcctggggctgacgagtcggcaggtg
cttgcgcacctggccaatctcggggtgcagacacgcagcccccaatcgagcgtcgaccgt
gagttggcgcaggccgtggccgaacgggtgcgggcgaacgtcgatgcggacgagcctggc
gtgacgccggccgccgccgaggaggtcgcccccgaggcggcagccgacgtagccgcgacg
acggcagaaccggtcgccgaggaaccggccgcccaggagcccgcccccgaggcggaggcc
ccgaaggccgacgaaccgccgagcctgttctcggccgcctcgacgcgatacgacgagccg
gttgccacgcccgccgccgagtccgacgcgtcctacggcacccagccgttgttcctgcag
ccgcaggccccggccgacaagccgaaggcaacccgcgcggccaagcaggcggagaagacc
gagcaggtcgacaagcccgcgaaggccgacgactcggacaagccggaggtagcgtcgtcc
accgacgccgattccggcgcgacgactcaggaagccaaggcacccgagacgaaggttgcc
gagacgaagattgccgagacgaaggctcccgaagcggagaccgtcgactcggatgtctcc
gacgagaccggcgcggagaacaccgacagctccgactccgagagcggtgacaactccgac
accgacgactcgggatcgggtcgtagccgtcgtcggcgtcgcggacgtcgtggtcgcggc
cgcggtcgcggtgaccagggcggtgacggcgagtcgggcgatgcctcggacgacgacgac
accgacgacaccgacgacaaggccgaggacacgacccccgacgtcgactcctcgaccgag
tccggcgagacgacgacggacgaggctgcagacgattcgaagtcggacgagccgacttct
cgccgccgacgccgtcgtcggtcggggtcggacacctcggaggaggccgaccgcaaggac
tctgcctccgacgactcgtcgaagggcgagtcgaaggacgacgattccgatgacgactcg
gacgacaacgacgacgagtccggtgacgattcgggtgaggcgtcctcgacccgccgccgg
cgtcggcgtcgccgccgcaagggcgggggagagcccgacgagggttcgccggacgatccg
ccgaacaccgtcgtccacgagcgtgaaccccgcagcaagcgggcgcgcgacgaggtgcag
ggcatctccggttcgacgcgactcgaggccaagcgtcagcgccgccgcgacggccgcgac
gccggtcgccggcgtccgccgatcctgaccgagtcggagttcctggcccgtcgtgaggcc
gtggaccgcgtgatggtggtgcgcgagcgcagcgccaacagcagcatcaccgacagcgac
ggccacgaccatgccgcggtggaggactacacccaggtcgcggtcctcgaggacggtgtc
ctcgtcgaacacttcgtcaccacggcgacgtcgtcgtcgatggtcggcaacatctacctc
ggccgcgtccagaacgtgctgcccggcatggaggcggccttcgtcgacatcggtcgcggt
cgcaacggcgtgttgtacgccggcgaggtcaactgggacgccgccggactcgacggcggc
tcgcggaagatcgagcaggcgctcaagcccggcgaccacgtgcttgtacaggtcagcaag
gacccggtgggacacaagggtgcccgcctgaccacgcagatctcgctggccggccggtac
ctcgtctacgtgcccggcgggtcgtcgaccggtatcagccgcaagctgcccgacgtcgag
cgcaagcgtctcaagcagatcctgtcgaagctggtccccgaggacgccggcgtgatcatc
cgcaccgcctccgagggagtgagcgccgaggagctcggtgccgacatcgcccgcctcgag
gcgaagtggaagtcgatcgaggagtcggtcgagagcgtcaagaagtccggctccggcgcg
ccgaaggccctctacgaggagcccgacctgctggtccgcgtggttcgcgacctgttcaac
gaggatttcaagaagctcgtcgtcgagggcgacaaggcgtggaacctcgtcgagggctac
gtcagctcggttgcgcccgacctcatggagcgggtggagaagttcagcaagccgcatgcg
gatgccccggactcgtttgtggtccaccgcatcgacgagcagctcgcgaaggcgctcgac
cgcaaggtgtggctgccctcgggcggcacgctgatcatcgagcacaccgaggcgatgacg
gtcgttgacgtcaacaccggcaagttcaccggttcgggcggaaacctcgaggagacggtc
acccgtaacaacctcgaggcggccgaggagatcgtgcggcagatgcgtctgcgcgacatc
ggcggcatgatcatcgtcgacttcatcgacatggtcctcgagtcgaaccgggacctggtg
ctgcgtcgactcaccgaggcgctggcgcgggaccgcacccgtcaccaggtgtccgaggtg
acctcgctcggcctggtccagatgacccgcaagcgtctcggaaccggtctgctcgaagca
ttctcgaccccgtgcacctcgtgtggcgggcgtggactcatcgtgcacgcgaatccggtc
gaggtgcgcggcgacgattcggcgaagtcggacggcgcgggctccaagcgttcgcgccgc
ggcaagaagaagtcggaggcccccgccgaggtggcggcgcccaaggcggctcctccggcg
atcccgccgcacaagcccgccgccgagcacccgttgttccgggcgatggccgcgaatcac
cacgacgacgaacatcccgagggcgagcaccacgagggtgagcacgtcgaggtcgagcag
gctgtcgcgactgccgccgagaccccgccggagacggagccagcgcaggcccaggaaccc
accagggctgacgaacccaccaaggccgacgaacccaccaaggtggaagaacccgccgag
gctgcggaaccggccgcgtcgaccgacggccaggcgcctgcggcgaagcgtcgccgacgg
gtggtccggcgtccggcgcagacgacgaccgcaccggagaacgtggtgatgacggccgtg
gacgcggctccggaagcgcccaagaccaccttcggtcccgtctccacgggagagccggtg
gttgcggtgcgtcgacgcccacggaagcggacggcgggcaggcccgccggaccgccgccg
gcagaaagctga
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