Gordonia alkanivorans: C5O27_13165
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Entry
C5O27_13165 CDS
T05876
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gav
Gordonia alkanivorans
Pathway
gav03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C5O27_13165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_13165
Enzymes [BR:
gav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C5O27_13165
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C5O27_13165
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C5O27_13165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TackOD1
NFACT_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AZZ81900
LinkDB
All DBs
Position
2900044..2900919
Genome browser
AA seq
291 aa
AA seq
DB search
MPELPEVETVRMGLEKHLTGRTVTAVEVLHPRAARRHVGGEPDLIGRLAGKHVTGVRRRG
KYMWIDVADDTDRAALVVHLGMSGQMLIARDGAPDHTHLRIRAHLDDDNELRFVDQRTFG
GWHLDDYAVSDDAADIPVSVAHIAPDPFDPAFDAAAVVNRMRAKHSEIKRVLLDQTVISG
VGNIYADEALWRARLHGARVAETISRKKLLELIEAATAVMTEAVEVGGTSFDALYVNVNG
QSGYFERSLNAYGREGQPCRRCGAIMRRESFMNRSSYFCPKCQTAPRRRTR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactacccgaggtcgagaccgtccgcatgggtctcgagaagcatctgaccgga
cggaccgtgaccgcggtcgaggtgctgcatccgcgtgccgcccgccgccacgtcggcggc
gagcccgacctgatcggtcgcctcgcgggcaaacacgttaccggagtgcggcgtcgcggc
aagtacatgtggatcgacgtcgccgacgacaccgaccgtgccgccctcgtcgtgcatctc
ggcatgagcgggcagatgctcatcgcccgcgacggggcgcccgaccacacccatctccgc
atccgcgcacacctcgacgacgacaacgaactgcggttcgtcgatcagcggaccttcgga
ggttggcatctcgacgactatgcggtctccgatgacgcggccgacattccggtgtcggtg
gcgcacatcgctcccgacccgttcgatccggccttcgacgcggcggccgtcgtgaaccgt
atgcgcgccaagcactccgagatcaagcgcgtcctgctcgaccagaccgtcatctccggc
gtcggcaacatctacgccgacgaggcactgtggcgggcccgacttcacggtgcgcgtgtc
gccgagacgatctcgcgcaaaaagctgctcgaactgatcgaggcggccactgcggtgatg
accgaggcggtggaggtcgggggcacctccttcgacgcgctgtacgtcaacgtcaacggc
cagtcggggtacttcgaacgctccctcaacgcctacgggcgtgaggggcagccgtgccgg
cgatgcggggcgatcatgcgccgggaatctttcatgaaccgcagctcttacttttgcccg
aagtgccagactgctccacggcgtcgcacacgttga
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