Gordonia alkanivorans: C5O27_13715
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Entry
C5O27_13715 CDS
T05876
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gav
Gordonia alkanivorans
Pathway
gav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5O27_13715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gav03019
]
C5O27_13715
Messenger RNA biogenesis [BR:
gav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C5O27_13715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
DUF459
Motif
Other DBs
NCBI-ProteinID:
AZZ81994
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All DBs
Position
3015292..3017286
Genome browser
AA seq
664 aa
AA seq
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MSDNTGTDTNGPEARTTRPRRRAASRKAGPPSTPPVEAVPVDTVPATTAPDAGPARQAPA
KAETAPRHSAKQKSGSSSGGRRGRHERGGDSRGRRNEQATPAPVDRLGTPRRLPKGGLRI
VALGGIGEIGRNMTVFEYDGRLLIVDCGVLFPEDQQPGVDLILPDFRYIEDRMDDVDAVI
LTHGHEDHIGAIPFLLRLRSDIPVVGSKFTLALVEAKCREHRLRPQLVEVTEGERTDHGP
FECEYFAVNHSIPDALAVAIRTPAGLALHTGDIKLDQLPLDGRLTDLAGFSRLGDEGVDL
FLVDSTNAEVPGFVTPEREIGGVLDQVIGKARQRVIVASFASHVHRIQQIIDVAHTHNRR
VCFVGRSMVRNMQIAQDLNYLSVPDGVVVDLDTAATLPDHRIVLISTGSQGEPLSALSRM
ARGEHRQINIRADDLVVLASSLIPGNENSVFAVVNGLAKRGATVITQQSAKVHVSGHASA
GELLYLYNAVRPSNVMPVHGEWRHLRANAALAVATGVPEDRVVLAEDGVVVDLVDGRADI
VGRVPVGHVYVDGLSVGDVGESTLSERLVLGEGGFIAITVAIDATTGRAVSSPEVSGRGF
SDDPDALKSAADLVNQVLDSLAAEGVNDAHRIAQGIRRAVGRWVSDVYRRRPMIVPTVLA
VGAD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaacaccggcactgacaccaacggtcccgaagcacggaccacgcgcccccga
cgccgtgccgcctcccgtaaggccggaccgccgagtacgccgccggtggaagcggtcccg
gtcgacacggttccggccaccaccgcgcccgacgcgggcccggctcgccaggcccccgcg
aaggccgagaccgcacccaggcattccgccaagcagaagtccggttcgtcgtccggtggc
cggcgcggccggcacgaacgcggcggcgactctcgcggtcgccgcaacgagcaggcgacc
ccggcgccggtcgatcgcctcggcaccccgcgccgcctgcccaagggtggactgcggatc
gtcgcgctcggcggtatcggcgagatcggccgcaacatgaccgtcttcgagtacgacgga
cgtctgctgatcgtcgactgcggtgtgctgttccccgaggaccagcagcccggcgtcgac
ctgatcctgccggacttccgctacatcgaagaccgcatggacgacgtcgacgcggtgatc
ctcacccacggccacgaggaccacatcggcgcgatcccgttcctgctgcggctgcgcagc
gacatccccgtcgtcggctcgaaattcacgctcgccctcgtcgaggccaagtgccgggaa
caccgcctgcggccccagctcgtcgaggtcaccgagggggagcggaccgaccacggcccg
ttcgagtgcgagtacttcgccgtcaaccactcgatcccagacgccctcgcggtcgcgatc
cgcacccccgcgggtctcgcgctgcacaccggagacatcaagctcgaccagctgcccctc
gacggtcggctcaccgacctcgccggcttcagccgcctcggcgacgagggcgtggacctg
ttcctcgtcgactcgaccaatgccgaggtccccggcttcgtcacccccgaacgcgagatc
ggcggcgtgctcgaccaggtcatcggcaaggccaggcagcgtgtcatcgtcgcgtccttc
gccagccacgtgcaccgcatccagcagatcatcgacgtcgcgcacacccacaatcggcgc
gtctgcttcgtcggccggtcgatggtgcgcaacatgcagatcgcgcaggacctgaactac
ctgtcggtgccggacggtgtcgtcgtcgacctcgacaccgccgcgacgcttcccgaccac
cgcatcgtgctgatctccaccggttcgcagggcgagccgttgtcggcgctgtcgcggatg
gcgcgcggcgagcaccgccagatcaacatccgcgccgacgacctcgtcgtgctggcgtcg
tcgctgatcccgggcaacgagaactcggtcttcgccgtggtcaacggtctggccaagcgc
ggtgccaccgtgatcacgcagcagagcgcgaaggtgcacgtgtccggccacgcctcggcc
ggcgagttgctctacctgtacaacgcggtgcgcccgtcgaacgtgatgccggtgcacggc
gaatggcgtcatctgcgcgcgaacgccgcactcgcggtcgcgaccggcgtgccggaggac
cgcgtcgtgctggccgaggacggtgtggtggtcgacctcgtcgacggccgcgccgacatc
gtcggccgcgtcccggtcggacacgtctacgtcgacggactgtccgtcggcgacgtcggc
gagtcgaccctgtccgagcgtctcgtgctcggcgagggcggcttcatcgcgatcaccgtc
gccatcgatgccacgacgggtcgcgcggtcagctcgccggaggtctccggcagaggcttc
tccgacgacccggacgcgctcaagtcggccgccgacctggtcaaccaggtcctcgactcg
ctggctgccgagggcgtcaacgacgcgcatcgcatcgcgcagggaatccggcgcgccgtg
ggccgctgggtctccgacgtctaccgtcgccggccgatgatcgtgccgacggtgctcgcc
gtgggcgccgactag
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