Gordonia alkanivorans: C5O27_13885
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Entry
C5O27_13885 CDS
T05876
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gav
Gordonia alkanivorans
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gav03019
]
C5O27_13885 (hrpA)
Enzymes [BR:
gav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C5O27_13885 (hrpA)
Messenger RNA biogenesis [BR:
gav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C5O27_13885 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
T2SSE
NACHT
SLFN-g3_helicase
ABC_tran
TsaE
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AZZ82022
LinkDB
All DBs
Position
complement(3047994..3051980)
Genome browser
AA seq
1328 aa
AA seq
DB search
MSVESSDPAPRDPQPGISRSELLRSLDAVAIVDAHRLRRRVDKLGRTPDPHRWEQLVADV
EKARHRLDRRRATVPVLRFPDELPVSAAREEIAAAIRDHQVVVVAGETGSGKTTQLPKIC
LELGRGIRGTIGHTQPRRIAASSVAKRIADETDTELGDAVGYSVRFTDRSGADTLIRVMT
DGILLREIATDPMLRRYDTLIIDEAHERSLNIDFILGYLRRLLPQRPDLKVIITSATIEP
ARFARHFSTPEMSVPVIEVSGRTYPVEVRYRPLSLQERPDSGDDTGGGEHADLDQIQGID
AAIDELWAGGRGDILVFLPTERDIRETADALKRRTGTGRNGGAEIVPLFARLSIADQQKV
FAPSNGRRIVLATNVAETSVTVPGIRYVIDTGTARISRYSTRTKVNRLPIEPVSQASARQ
RAGRCGRVAPGVCIRLYSENDFDARPAFTDPEILRTNLAAVILQMTSLKLGEIADFPFVQ
PPDERAIRDGMGVLTELGAITVSREGGPPRLTPVGRSMSRIPVDPRIARMLIAGRELGCL
DHLLVIASAMSLPDPRERPAEHREATDASHRRFVVPQSDFLSYVELWRYLDEQRKELSSS
KFRRMCEREFLHFLRIREWRDLHRQLTEIVKDLDWPVSPAGSDLPEVDADAVHRAILSGL
LSNIAARNTEGREFTGARNTTLMIFPASPLAKKPPPFIMAAEVLETSRLFAHTVAGIDPL
WAEKLAGDLVKRTHSEPHWSSKRGAAMAYERVTLYGVTLVARRRVDYGPIDPVVSRELFI
RHALVEGDWRTQHPFFERNRALLEAASDVENRMRTRGLVITEDQLFEFYDKRVGAEVTSA
RHFDTWWKKARRSDAALLDLKPEDVAASTEAAPTDYPGAWQQGDTRLELRYRFEPGTPDD
GVTVMIPRALLPHVRPAGFDWSVPGMRTELATALVKSLPKQLRKSMSPAQRFAELALARL
TPRSEPLTVGLARELTTITQMTVTAGDFDVDRIPAHLRMHFAVADDAGEITARADSIAEL
QRAATPAASKTVKRTLYRAWTDEGIGTLAAQRTVDIAGQRLTRYPTIDAITDDAGRTRGV
VVIDAASEQTRDRLAARGIVALLDLAIPPLHRRVAGSLGAAGRLALSQSPYPDLDALLAD
CTRRAIRDVVAGLDAGTLSAVRSPETFRVLTEKLRPRITESAPDYFSLAVESLGWVAPVR
AAIDRHAGSLAADDVAEQLDNLVFDGFVAATARRHLENVPRYLAAAEARLSALPASAARD
QAGVAVVDRVTERWAQRLTQVPDHRKAHVNDEAQWLVEELRVGLFAERLGTAYPVSEKRV
LRTLDRLG
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcgagtcctcagatccagccccgcgagatcctcagcccggcatctcccgttcc
gaactgctgcggtcgctcgacgcggtcgcgatcgtcgacgcccaccgtctgcgccgccgg
gtcgacaaactcggccgcacccccgatccgcacagatgggaacagctcgtcgccgacgtc
gagaaggcccggcaccgcctcgaccgtcgccgggccacggtgccggtgctgcgcttcccc
gacgaactccccgtctcggccgcccgcgaggagatcgccgccgcgatccgggaccaccag
gtcgtggtcgtggccggtgagaccggttccggcaagaccacgcagctgccgaagatctgc
ctcgaactcggccggggcatccgcggcaccatcggccacacgcagccgcgtcgtatcgcg
gcgagctcggtggccaagcgcatcgccgacgagaccgacaccgaactcggtgacgcggtc
ggctattcggtccggttcaccgaccgctcgggcgccgacaccctgatccgcgtgatgacc
gacggcatcctgctccgcgagatcgccaccgatccgatgctgcggcgctacgacaccctc
atcatcgacgaggcccacgagcgcagcctcaacatcgatttcatcctcggctatctgcga
cggctgctaccgcaacgaccggacctgaaggtgatcatcacctcggcgacgatcgaaccc
gcccgcttcgcacggcatttcagcacacccgagatgtcggtcccggtcatcgaggtgtcg
ggtcgcacctaccccgtcgaggtccgttaccggccgttgagtctgcaggagcgccccgac
agcggcgacgacaccggcggcggcgaacacgccgacctcgaccagatccagggcatcgac
gccgcgatcgacgaactgtgggccggcggccgcggcgacatcctggtcttcctccccacc
gaacgcgacatccgcgagaccgcggatgcgttgaagcgccggacgggaacgggccgcaac
ggcggcgcggagatcgtcccgctgttcgcgcggttgtcgatcgccgaccagcagaaggtc
ttcgccccgtcgaacggtcgccgcatcgtgctggccaccaacgtcgccgagacatcggtg
acggtccccggcatccgctacgtcatcgacaccggcaccgctcgtatcagccggtactcg
acccgcaccaaggtcaatcgccttcccatcgaaccggtttcgcaggccagcgcccgccag
cgcgccggccggtgcggtcgcgtcgcccccggtgtgtgcattcggctctacagcgagaac
gacttcgacgcccggcccgcgttcaccgacccggagatcctgcgtaccaacctcgccgcc
gtcatcctccagatgacctcgctgaaactcggtgagatcgcggacttcccgttcgtccag
ccgcccgacgagcgcgccatccgcgacggcatgggcgtgctcaccgaactcggggcgatc
accgtgagccgtgagggcggcccgccgcgcctcacccccgtcgggcgctcgatgtcccgg
atcccggtggatccgcggatcgcgcggatgctgatcgcgggtcgcgaactcggctgcctc
gaccacctgctggtcatcgcctccgcgatgtccctgcccgacccccgcgagcgtccggcc
gaacatcgcgaggccaccgacgcctcgcaccggcgcttcgtcgtgccgcagtcggacttc
ctgtcctacgtcgagctgtggcgctacctcgacgaacagcgcaaggagctgtccagcagc
aagttccgtcggatgtgcgaacgggagttcctgcacttcctgcgaatccgggaatggcgg
gacctgcatcgccagctcaccgagatcgtcaaggatctcgactggccggtgagtccggcc
ggttccgacctgcccgaggtcgacgccgatgcggtccatcgcgcgatcctgtcaggactg
ctctccaacatcgcggcgcgcaacaccgagggccgcgagttcaccggggcgcgcaacacg
acgctgatgatcttcccggcgtccccgctcgccaagaagccgccgccgttcatcatggcc
gccgaggtcctcgagacctcgcgactgttcgcgcacacggtcgccggcatcgacccgctg
tgggcggagaagctggccggcgatctggtcaagcgcacgcacagcgaaccgcactggtcg
tccaagcgcggtgccgcgatggcctacgagcgggtcaccctctacggcgtcaccctcgtc
gcgcgtcgtcgcgtcgactacggccccatcgacccggtcgtctcacgcgaactgttcatc
cgccacgccctcgtcgagggcgactggcgcacgcagcacccgttcttcgaacgcaaccgc
gcactgctcgaggccgcctccgacgtcgagaaccgtatgcgcacacgcggactggtgatc
accgaggaccagctgttcgagttctacgacaagcgggtgggcgccgaggtcacctccgca
cggcacttcgacacgtggtggaagaaggcgcggcgctccgatgcggctctgctcgatctc
aagccggaggacgtcgcggcgagtaccgaagccgcccccaccgactatccgggcgcctgg
cagcagggcgacacccgactcgaactccgctaccggttcgagcccggcacccccgatgac
ggtgtcaccgtgatgatcccgcgcgcactgctcccccacgtgcgcccggcgggtttcgac
tggtcggtgcccggcatgcggacggaactggccaccgcactggtgaagtcgttgccgaag
cagctacgcaagtcgatgtcgccggcacagcgtttcgccgaactggcactggcccgcctc
accccacggagcgagccactcacggtcgggctcgctcgcgagctcaccacgatcacgcag
atgacggtcaccgcaggcgatttcgacgtcgaccggattccggcccacctacggatgcat
ttcgcggtcgccgacgacgccggggagatcaccgcgcgagccgattccatcgccgaactg
cagcgcgcggccaccccggcagcgtcgaagacggtgaagcgcaccctgtatcgcgcctgg
accgacgagggcatcggcactctcgccgcacagcggaccgtcgacatcgccggacaacgc
ctcacccgttacccgaccatcgacgcgatcaccgacgacgccggacgcacgcgcggggtg
gtcgtgatcgacgccgcgtcggagcagacccgtgatcgattggcggcgagaggaatcgtc
gcgctcctcgacctggcgatcccgcccctgcaccgccgcgtggccggttccctcggggcc
gcgggtcgactcgcgctgagccagagcccctacccggatctcgatgcgttgctggccgac
tgcacacgtcgcgccatccgcgatgtcgtggcgggcctcgacgccggcaccctgtcggcg
gtgcgctctcccgagacattccgcgtgctcaccgagaagttgcgtccacggatcaccgag
tcggcaccggactacttctctctcgccgtcgaatccctcggttgggtggcaccggtccgt
gccgcgatcgaccgacatgccggttcactcgcggccgatgacgtcgccgaacagctggac
aatctcgtcttcgacggattcgtcgccgccaccgcacgacgacatctggagaatgtgccg
cgctacctcgcggccgccgaggcccgcctgtcggcgctccccgcatcggcggcccgggat
caggccggagtagccgtcgtcgaccgggtgaccgagcggtgggcgcaacgactgactcag
gtgcccgaccaccggaaggcgcacgtcaacgacgaggcccagtggctcgtcgaggagctg
cgggtgggattgttcgccgaacggctcggcaccgcgtacccggtgtcggagaagcgggtc
ctacgaactcttgaccgactcggctga
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