Gordonia alkanivorans: C5O27_14060
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Entry
C5O27_14060 CDS
T05876
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gav
Gordonia alkanivorans
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gav03016
]
C5O27_14060
Enzymes [BR:
gav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
C5O27_14060
Transfer RNA biogenesis [BR:
gav03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
C5O27_14060
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Lipase_GDSL_2
LPG_synthase_C
Motif
Other DBs
NCBI-ProteinID:
AZZ82054
LinkDB
All DBs
Position
complement(3087999..3089285)
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AA seq
428 aa
AA seq
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MDTPPENRAAENTPPGDEAPEVEPLLAPAGGVPPVLSTAAEFADAARALAAGEGPIAVDT
ERASGYRYSQRAYLIQIKRRGSGSFLLDPIADPEALAPVIDALRGPEWVLHAADQDLPCL
RELGFECVELYDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRRPLPDDWLNY
AALDVEVLVELRDAMDAALAESGKDGWAREEFAYVLSRPPAPPRTDRWRKTSNIHTVKSA
RALAAVRELWTAREELAERRDVAPGRVLPDTAIVNAATVDPKSNSELTRLPVFGGPRQRR
QAGIWLSALQRARELPDSELPARKTTGPGLPPVSRWEQRNPEAAARMQKVRPALKEVAEH
HTLPVENILAPDVVRQLCWDGLAEPVTTEAMDAHLTAAGARPWQRQLSVEALTEALREAG
TTETTSSE
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
gtggacacaccacccgagaaccgagcagccgagaacacccccccaggggacgaagccccc
gaggtcgagccgttgctcgcccccgccggcggtgtcccgccggtgctctcgaccgcggcg
gagttcgccgacgccgcgcgagcactcgccgcgggcgagggacccatcgccgtcgacacc
gaacgcgcctccggttaccgctactcccagcgcgcctacctgatccagatcaaacgacgc
ggctcgggcagcttcctgctcgacccgatcgccgatcccgaggcactcgccccggtgatc
gacgcgctacgcgggcccgagtgggtgctgcacgccgccgatcaggatctcccctgccta
cgcgagctcggcttcgaatgcgtcgagctgtacgacaccgagctcgccgggcgcctgctc
ggcctcgccaaggtgaacctcgccgcgatggtcgcccagttcctcgggctcggcctgctc
aagggtcacggcgcggcggactggtcacgacgaccgctccccgacgactggctgaactac
gccgccctcgacgtcgaggtgctcgtcgaactccgggacgcgatggacgcggcactggcc
gagtccggcaaggacggctgggcccgcgaggagttcgcctacgtgctgtcccgcccgccg
gcccccccgcgcaccgaccgctggcgcaagacctccaacatccacaccgtgaagtcggct
cgtgcactcgcggcggtccgcgaattgtggacggcgcgcgaagaattggcggagcgccgg
gacgtcgctccgggccgcgtcctgcccgacaccgcgatcgtcaacgccgcgaccgtcgac
ccgaaatcgaacagcgaactgacccgcctgccggtcttcggtggcccccgccagcgtcgc
caggccgggatctggctcagcgccctgcaacgggcccgcgaactccccgacagcgagttg
ccggcccgcaagaccaccggccccgggcttcccccggtgagccgctgggaacagcgcaac
ccggaggccgcggcgcggatgcagaaggtccgcccggcgctcaaagaggtcgccgagcac
cacaccctcccggtggagaacatcctcgccccggacgtcgtccgccagctgtgctgggac
ggactggccgagcccgtcaccaccgaggcgatggacgcacacctcaccgccgccggagct
cgtccgtggcagcggcagctcagcgtggaagcgttgaccgaggcgttgcgcgaggccggg
acgaccgagaccacatcgtcggagtag
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