Gordonia alkanivorans: C5O27_15105
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Entry
C5O27_15105 CDS
T05876
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
gav
Gordonia alkanivorans
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gav03019
]
C5O27_15105
Enzymes [BR:
gav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C5O27_15105
Messenger RNA biogenesis [BR:
gav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C5O27_15105
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AZZ82235
LinkDB
All DBs
Position
3317463..3320291
Genome browser
AA seq
942 aa
AA seq
DB search
MSQLDAFTSRLDFGLDPFQRRACEALEAGHGVLVCAPTGAGKTIVGEFAVHLALAGGTKC
FYTTPIKALSNQKYADLAAVHGHESVGLLTGDSSINPDAPIVVMTTEVVRNMIYAESRAL
DGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGDWIQTVRGDT
SVIVDEHRPVPLSQHMLVGQRMFDLFGPADRDPADRKGSRPRVNPELKRHIRHRILLAED
ERDSSRGRGRGGGGGQPRRRDGRGPLLSRPNLVGRLDREGLLPAIGFIFSRAGCDAALAQ
CLRSGIALLTPEEAAEVDAVVDRRLTELSPSDADVLGVQEWREGLRRGLASHHAGMLPTF
RHAVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKYNGESHVDLTPGEFTQLTGR
AGRRGIDVEGHAVVVWTPEVVPEEVAGLAGARTFPLRSSFSPEYNMAVNLLGRLGLDGAR
ELLHRSFAQFQADRSVVGLARKLHESQRALRKLDGELARAAEARGLEPGGVDATGAPAAG
ETEAYAGFLGYVTLREEIRRRERDLKYRKRINTEDAIVADLAALKRGHVIGVPVGRHRGL
AVIVEPATQAADPKPLVVTEDAWCGRIGLRDFVNPPEVLGNMRLPKNADRRTGRGRRDLA
SALRSTGIEMPRGRSKKRADAADDPELAQMRRTLRAHPAHQIPNGDELFRLAEKRNRLLR
DIVTAERSIGERTSTLGVTFDHIVGVLSELGYVERVREASESTGHNMRVTESGKLLARIY
SESDLVVTECIRAGVWDDLSPADLAAVVAALVYESRRDSYGGVDALPGSTSLRTAMAATV
DIWSKVTAVESRHRVSPTREPDTGFSLAVATWASGRSLSEALLLAGERGQLLSPGDFVRW
NRQVIDLLEQIRLCVGTDTRLGGTARSAVKAIRRGVVAAELG
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcaactcgacgcgttcacgtcgcggctggacttcggactcgatccgttccagcgc
cgtgcctgcgaggccctcgaagccggtcacggcgtgctggtctgcgcaccgaccggcgcg
ggcaagaccatcgtcggcgaattcgcggtccacctcgctctcgccggcgggaccaagtgc
ttctacacgaccccgatcaaggcgctgagcaaccagaaatatgccgacctcgccgccgtt
cacggccatgagtcggtcggactgctcaccggcgacagctccatcaacccggatgcgccg
atcgtcgtgatgacgaccgaggtcgtgcgcaacatgatctacgccgaatcccgcgcgctc
gacgggctgtcgcatgtggtgatggacgaggtgcacttcctcgccgatcgcttccgcgga
gcggtctgggaagaggtgatcctgcacctcgagccgtccgtgcgtgtggtgagcctgtcc
gcgaccgtcagcaacgccgaggagttcggcgactggatccagaccgtccgtggcgacacc
tccgtcatcgtcgacgagcaccggccggtcccgctgtctcagcacatgctggtcggccaa
cggatgttcgacctcttcggcccggccgatcgcgatcccgcggaccggaaggggtcgcgt
ccgcgggtcaatcccgaactcaagcggcacatccgtcaccgcatcctgctcgccgaggac
gagcgtgattcgtcccggggccgaggccggggaggtggcgggggacagccgcgccgacgc
gacggccgcggtccactgctctcgcgcccgaatctcgtcggtcgcctcgaccgtgagggt
ctgttgcccgcgatcgggttcatcttctcccgtgccggttgcgacgccgccctggctcag
tgtctgcggtcgggtatcgcgctgctgacacccgaggaggccgccgaggtcgacgccgtc
gtcgaccggcgcctcaccgaactctcgcccagcgacgccgacgtgctgggcgtgcaggag
tggcgcgaaggtctccgccgaggcctggcgtcgcatcacgccgggatgctcccgaccttc
cgccacgccgtcgaggagcttttcgtccgtgggctcgtccgcatggtgttcgccacggag
acactggctctcgggatcaacatgccggcccggtcggtggtcctcgaacgtctggtgaag
tacaacggcgagtcgcacgtcgacctcacccccggcgagttcacccagctgaccggccgc
gccggacgccgcgggatcgacgtcgagggccatgccgtcgtggtgtggacacccgaggtc
gtccccgaggaggtcgccggactcgcgggtgcccgcaccttcccgcttcgcagctccttc
tcgccggaatacaacatggcggtcaacctgctcggccggctcggtctcgacggggcccgt
gaactcctgcaccgatcgttcgcccagttccaggccgaccgctcggtggtcgggctggcc
cgcaagctccacgaatcgcagcgggcgctgcgcaagctcgacggcgagctggcccgcgcc
gccgaggcccggggtctggaacccgggggagtcgacgccaccggggcaccggcagcgggc
gagaccgaggcgtacgccgggttcctcggctacgtcacgctccgcgaggagatccgccgt
cgagaacgagacctgaagtaccgcaagcggatcaacaccgaggatgcaatcgtcgccgac
ctggccgcgctcaaacggggtcacgtcatcggggtgcccgtcggacgccaccggggtctc
gcggtgatcgtcgaaccggccacccaggcagcagatcccaagccgctggtggtcaccgag
gacgcctggtgcggacgtatcgggctgcgtgacttcgtcaatccgcccgaggtcctcggc
aacatgcggttgccgaagaacgccgaccgccggaccggacgcggccgccgcgacctcgcg
tctgcactgcggtcgaccgggatagagatgccccgggggcgctccaagaagcgcgccgac
gccgccgatgacccagagctggcccagatgcgtcgcacgctgcgtgcccatcccgcgcat
cagatcccgaacggcgacgagctgttccgtctcgccgagaagcgcaaccgtctgctgcgc
gacatcgtcaccgccgaacgcagcatcggtgagcgaacctcgacgctcggtgtcaccttc
gaccacatcgtcggtgtcctcagcgagctcgggtacgtcgaacgcgtccgcgaggcctcc
gaatcgaccggccacaacatgcgggtgaccgagtcgggcaagctgctggcccgcatctac
agcgagagcgatctcgtggtgaccgagtgcattcgcgcgggcgtgtgggacgacctctcg
ccggccgacctggccgccgtcgtcgccgcactcgtctacgagagccgtcgcgacagctac
ggcggggtcgatgcgctgcccggcagcacctcgctgcgtactgcgatggccgcgaccgtg
gacatctggtcgaaggtgacggcggtcgagtcgcgccaccgggtcagtcccacccgggag
ccggacaccggtttctcgctcgcggtggcgacctgggcgtcgggccgatcgctcagcgag
gcactgctcctcgcgggcgaacgcggtcagctgctctcacctggcgacttcgtccggtgg
aatcgtcaggtcatcgacctcctggaacagatccggctctgcgtcggcaccgacacccgc
ctgggcggcaccgcacgatccgcggtcaaggcgatccgccggggagtggtggccgccgaa
ctcggttga
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