Gordonia alkanivorans: C5O27_16705
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Entry
C5O27_16705 CDS
T05876
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gav
Gordonia alkanivorans
Pathway
gav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C5O27_16705 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_16705 (recD)
Enzymes [BR:
gav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C5O27_16705 (recD)
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C5O27_16705 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
PhoH
RecD_N
AAA_22
SH3_13
AAA_16
UvrD-helicase
Helicase_RecD
TraI_hel_assoc_N
Mg_chelatase
PIF1
UvrD_C
Herpes_Helicase
Motif
Other DBs
NCBI-ProteinID:
AZZ82489
LinkDB
All DBs
Position
complement(3650634..3652508)
Genome browser
AA seq
624 aa
AA seq
DB search
MSTPDVQRVDSATGTLADWNAAGLLAAADLHITDRLVRMCGESVSDDARLGAALAVRAVR
LGSTCLALDRIGELAAGEDTAEIEMPSPGDLLDALAASPLVAGSDAGPLCPLVVRDSVDG
PLVYLQKYFRQEQTIREILDRRSRTAPSVDTAALREAIAAVYSSPDDGALQKLAAAVAAT
RWTTVLAGGPGTGKTYTVARILAVLDRLQGPGLRIGLCAPTGRAAAQLQASVEAESTLPV
TAHAVTLHSLLGWRPGSNPRYGRGRTLPHDVIVVDETSMLSMTAMSRLLDAVRPDARVVF
VGDPHQLASVEAGAVLADLVERTDVPATAETDGSPTTPTQAFDAVGLDPAAEDLDPDDVA
RMADGVITLRRQFRFGGGISQVAAAVNAGDPDAVLELVTSPEIGDVELVAPDDLDGVAGD
ILSWGRGLRTAARRGDAAGALDALDSHRVLCAHREGSWGVRGWTTRITDWLGTTEAEHMG
WYVGQPILVTANDRQTSTFNGDTGVVIAGPDTEPQPANRPGSSDAVRVAFRRGGEVRLLH
PTQLADVVSVHAMTIHRSQGSQFDQVTVVLPPAGSELLTRELLYTAITRARSRVRIVGTA
DVLTAAVNRRVQRASGLRSTLSAI
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgagcacacccgatgtccagcgtgtcgactcggcgacgggcacgctcgccgactggaac
gccgcgggccttctcgccgctgcggatctgcacatcaccgaccgcttggtccggatgtgt
ggcgaatccgtgtccgacgacgcccgtctcggtgcggctctcgccgttcgcgccgtccgc
ctcggctccacctgcctcgccctcgaccggatcggggagctggcggcgggggaggacacc
gcggagatcgagatgccctcgcccggcgaccttctcgacgcgttggcggcgagtccgctc
gtcgccgggagcgacgccggaccgttgtgcccgctggtggttcgcgactcggtcgacggc
ccgctcgtctacctgcagaagtacttccggcaggaacagacgattcgggagatcctcgac
cggcggtctcggaccgcaccctccgtggacacggcggcactccgcgaggccatcgcggcg
gtctactcctcgcccgacgacggcgccctccagaagcttgccgccgcggtcgcggcgacc
cgctggacgacggtcctcgccggtggtccgggaacgggcaagacctacaccgtcgcccgt
atcctcgccgtcctcgaccgtctccagggacccggcctccgcatcggactctgcgcaccc
accgggcgagccgctgcacagctccaggcctccgtcgaggccgaatccaccctcccggtc
accgcccacgcggtcaccctgcactctctgctcggctggcgccccggttcgaatccccgg
tacggacgcgggcgcaccctgccgcacgacgtcatcgtcgtcgacgagacgtcgatgctg
tcgatgacggccatgagccggctgctcgacgcggttcgtcccgacgcacgggtcgtgttc
gtcggcgatccgcaccagttggcctcggtggaggcgggcgccgtactggccgatctcgtc
gaacgaaccgacgtcccggcaaccgccgaaacagacgggtcgccgacgacaccgacgcag
gcgttcgacgccgtgggcctcgatcccgccgccgaggatctcgatcccgacgacgtggca
cgcatggccgacggcgtcatcaccctccggcggcagttccggttcggtggcggcatctcg
caggtcgcggccgccgtcaacgccggcgatcccgatgcggtcctggaactggtcacctca
ccggagatcggcgacgtcgaactggtcgcccccgacgacctcgacggggtggccggcgac
atcctgtcgtggggccgtggcctgcgcaccgcggctcgccggggcgacgcggcgggagcc
ctggacgccctcgactctcaccgggtcctgtgtgcgcaccgcgagggctcgtggggcgtt
cgcggatggacgacgcggatcaccgactggctgggcacaaccgaggccgaacacatgggt
tggtatgtgggacaacccatcctggtgacggcgaacgatcgccagacctcgaccttcaac
ggtgacaccggtgtcgtcatcgccggcccggacacggagccgcagcccgcgaatcgtccc
ggctcgtcggatgcggtccgggtggcgttccggcgcggcggtgaggtccggttgcttcac
ccgacccagctcgccgacgtggtgtcggtccacgcgatgacgatccaccgcagtcagggc
agccagttcgatcaggtgaccgtcgtcctgccgccggccggctcggaactgctgacccgc
gagctcctctacaccgcgatcacccgcgcgcggagccgggtgcgcatcgtcggcaccgcc
gacgtgctcaccgcggccgtcaaccgacgcgtgcagcgggccagcgggttgcggtcgacg
ctcagcgcgatctga
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