Gordonia alkanivorans: C5O27_17475
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Entry
C5O27_17475 CDS
T05876
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
gav
Gordonia alkanivorans
Pathway
gav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C5O27_17475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_17475
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C5O27_17475
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C5O27_17475
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_21
RsgA_GTPase
AAA_16
AAA_25
nSTAND1
AAA_22
ExoX-like_C
DnaJ_CXXCXGXG
NACHT
ThiI
Viral_helicase1
ScfRs
cobW
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AZZ82620
LinkDB
All DBs
Position
complement(3812257..3815139)
Genome browser
AA seq
960 aa
AA seq
DB search
MVDRLIVRGAREHNLRGIDVDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSA
YARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGKAH
CPICGEAIAKQTPQQIVDQVLAMEEGTRFQVLAPVVRTRKGEFVDLFAELQTQGFSRARI
DGVVHQLTDPPKLKKQEKHDIEVVVDRLVVKAGAKQRLTDSVETGLRLADGIIVLDFVDL
EEDDPNRERRFSEKMACPNAHPIAIDDLEPRSFSFNSPYGACPECDGLGIRKEVDEELVV
PDPEMSLAEGAIAPWSTGHNADYFLRLMSGLADQMGFDINTPWKKLPVKARRALLNGSDH
QVHVKFRNRYGRTRSYYTEFEGVMSFLARRMDQTESEQMKERYEGYMRDVPCPACQGARL
RPEILAVTLDHPEYGPKSIAEVCALSVADCANFLDNLHLDERQAAIAGRVLKEVQARIRF
LLDVGLEYLSLSRAAGSLSGGEAQRIRLATQIGSGLAGVLYVLDEPSIGLHQRDNRRLIE
TLTRLRDLGNTLIVVEHDEDTIRSADWIVDIGPRAGEHGGHVVHSGSYKDLLKNRQSLTG
AYLSGRDSLPVPEIRRPIDRKRQLTVVGAREHNLRGIEVSFPLGVMTAVTGVSGSGKSTL
VNDILATVLANKLNGARQVPGRHTRIKGLDNLDKLVQVDQSPIGRTPRSNPATYTGVFDK
IRTLFAATTEAKVRGYQPGRFSFNVKGGRCEACTGEGTIKIEMNFLPDVYVPCEVCHGAR
YNRETLEVHYKGKTIAEVLDMPIEEAADFFEPVASIHRYLKTLNDVGLGYVRLGQPAPTL
SGGEAQRVKLAAELQKRSMGRTVYILDEPTTGLHFEDIKKLLAVINGLVDKGNTVITIEH
NLDVIKTADWVIDMGPEGGSGGGTVVAEGTPEDIAVAPGSHTGKFLAEILEVDETVASAG
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
gtggttgatcgtctgatcgtccgaggtgcccgcgaacacaatttgcgcggcatcgatgtc
gacctccctcgggacagcctcatcgtgttcaccgggttgtcggggtcgggcaagtcgtcc
ctcgccttcgacacgatcttcgccgaggggcagcgccgctacgtcgagtcgctgtcggcc
tacgcgcggcagttcctgggccagatggacaagcccgacgtcgacttcatcgagggtctg
tcaccggcggtgtccatcgaccagaagtcgaccaaccgcaacccgcgatcgacggtcggc
accatcaccgaggtctacgactacctccgtctgctgtatgcccgtgcaggtaaggcgcac
tgtccgatctgtggcgaggcgatcgccaagcagacgccgcagcagatcgtcgaccaggtg
ctcgccatggaggagggcacccgcttccaggttctcgcaccggtggtccgtacccgtaag
ggcgagttcgtcgacctcttcgccgaactacagacccagggcttctcacgcgcccgcatc
gacggcgtcgtccaccagctgaccgacccgccgaagctgaagaagcaggagaagcacgac
atcgaggtcgtcgtcgaccgcctcgtcgtcaaggccggcgccaagcagcgtctcaccgat
tcggtggaaaccggtctgcgtctcgccgacggcatcatcgtgctcgacttcgtcgacctc
gaagaggacgacccgaatcgcgagcgccggttctccgagaagatggcgtgccccaacgcc
cacccgatcgcgatagacgacctcgagccgcgctcgttctcgttcaactcgccctacggt
gcctgccccgagtgcgacggcctcgggatccgcaaggaggtcgatgaagaactcgtcgtg
cccgacccggagatgagcctcgccgagggcgcgatcgcgccgtggtcgaccggtcacaac
gccgactacttcctgcgcctgatgtcgggtcttgccgaccagatgggcttcgacatcaac
accccgtggaagaagctgccggtcaaggctcgtcgagcgttgctcaacggcagcgaccac
caggtgcacgtgaagttccgcaaccgctacggacgcacccgctcgtactacaccgagttc
gagggcgtcatgtcgttcctcgcccggcggatggaccagaccgagtccgagcagatgaag
gaacgctacgaggggtacatgcgcgacgtgccgtgccccgcctgccagggtgcgcgtctg
cgcccggagatcctcgcggtcaccctcgaccatcccgagtacggcccgaagtcgatcgcc
gaggtctgtgcgctgtcggtcgccgactgcgcgaacttcctcgacaacctccacctcgac
gagcgtcaggccgcgatcgccggccgcgtgctcaaagaggtccaggcacgtatccgcttc
ctgctcgacgtcggactggagtacctgtcgctgtcgcgtgcggccggatcgctgtcgggc
ggcgaggcccagcgcatccgcctcgcgacgcagatcggctccggactcgcgggcgtcctc
tacgtcctcgacgagccgtcgatcggtctgcaccagcgcgacaaccgtcgactgatcgag
accctcacccgactccgcgacctgggcaacacgctgatcgtcgtcgagcacgacgaggac
accatccggtccgccgactggatcgtcgacatcggtccccgagccggtgagcacggcggt
cacgtcgtgcacagcggcagctacaaggacctgctgaagaaccgccagtcgctgaccggt
gcgtacctctcgggccgggattcactcccggtcccggagatccgccggccgatcgaccgc
aagcgtcagctgaccgtcgtcggtgcacgtgagcacaacctgcgcgggatcgaggtgtcg
ttcccgctcggcgtcatgacggcggtgaccggtgtgtccggctccggcaagtcgacgctg
gtcaacgacatcctcgcgaccgtgctcgccaacaagctcaacggcgcacgtcaggtgccc
ggccgccacacgcggatcaagggactcgacaacctcgacaagctcgtccaggtcgaccag
tcgccgatcggacgcaccccgcgatccaacccggcgacctacaccggcgtcttcgacaag
atccgcacactgttcgcggccaccaccgaggccaaggtgcgcggctaccagccgggccgg
ttctcgttcaacgtcaagggcggccgctgtgaggcctgcaccggcgagggcacgatcaag
atcgagatgaacttcctgccggacgtctacgtcccgtgcgaggtctgccacggtgcccgc
tacaaccgggagaccctcgaggtccactacaagggcaagaccatcgccgaggtgctcgac
atgccgatcgaggaggccgccgacttcttcgagccggtcgcctcgatccatcgctacctc
aagaccctcaacgatgtcggtctcggttacgtccgcctcggacagccggccccgaccctg
tcgggcggcgaggcgcagcgcgtgaagctggctgcagagctgcagaagcggtcgatggga
cgcacggtctacatcctcgacgagccgaccaccggcctgcacttcgaggacatcaagaag
ctcctcgcggtgatcaacggcctcgtcgacaagggcaacacggtcatcaccatcgagcac
aacctcgacgtcatcaagacggccgactgggtcatcgacatgggacccgagggtggtagc
ggcggcggcacggtcgtcgccgagggcacgcccgaggacatcgcggtcgcgccgggcagc
cacaccggcaagttcctcgccgagatcctcgaggtcgacgagacggtcgcgtcagcgggc
tga
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