Gordonia alkanivorans: C5O27_17595
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Entry
C5O27_17595 CDS
T05876
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gav
Gordonia alkanivorans
Pathway
gav03030
DNA replication
gav03410
Base excision repair
gav03420
Nucleotide excision repair
gav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C5O27_17595
03410 Base excision repair
C5O27_17595
03420 Nucleotide excision repair
C5O27_17595
03440 Homologous recombination
C5O27_17595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gav03032
]
C5O27_17595
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_17595
Enzymes [BR:
gav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C5O27_17595
DNA replication proteins [BR:
gav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C5O27_17595
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
C5O27_17595
NER (nucleotide excision repair)
GGR (global genome repair) factors
C5O27_17595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
DNA_pol_lambd_f
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AZZ82642
LinkDB
All DBs
Position
complement(3872124..3874871)
Genome browser
AA seq
915 aa
AA seq
DB search
MSPAQSSPAATRTGSKGKTKQPVLMLLDGHSLAYRAFFALPAENFKTATGQTTNAVYGFT
SMLINLLRDEEPTHIAAAFDVSRKTFRSEMFPEYKAQRSKSPDEFNGQVDLTKEVLDALG
VTVMAIEGFEADDIIATLATQAREQDFKVLIVTGDRDSLQLVDPSTTVLYPRKGVSDLTR
FTPEEVEKKYGLTPAQYPDYAALRGDPSDNLPGIPGVGEKTASKWIREYGSLASLVDHVD
EVKGKVGDALRANLASVQTNRQLTELIRDMQLPAGPEDLAMVGWDRDRIHQLFDDLEFRV
LRDRLFSTLSSVEPEAEAGFDLDGSVLGAGEVAGWLTEHARTGRTGLAVTAPHVVVGSDP
TGLAIAAADGSSAYVDVTTLTPEDDAALANWLADPQALKAVHEAKWAVHALRSRGWKLDG
VTSDTSLAAYLVRPGQRTFNLDDLALRYLRRELRADTGAGDGQMSLLDDDTEGKVAEQHM
LEARAVQELADTLDTELDRIDSKPLLTEMELPLSFVLADLEAAGIAVDVDHFNALAQMFN
DRIRAAAESAYEVIGEQINLGSPKQLQTVLFDKLDMPKTKKTKTGYTTDADALQSLYEKT
EHPFLAHLLEHRDATRLKVTVDGLLKSVADDGRIHTTFNQTIAATGRLSSTEPNLQNIPV
RTEAGREIRRGFIVGTDQDSGVNYDCLMTADYSQIEMRIMAHLSEDEGLIEAFNTGEDLH
NFVGSRAFGVPIDEVTTEMRHRVKAMSYGLAYGLSAFGLAAQLKISREEAKDQMEAYFAR
FGGVRDYLHDVVAEARRNEYTATLFGRRRYLPDLNSDNWQRRQSAERMALNAPIQGTAAD
IIKVAMINVHKRFLAEKLTSRVLLQVHDELVVEVAAGERDAVEAAVREEMGNAITLSVPL
EVSVGFGRSWDDAAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
gtgagtccagcgcagagttccccggcagctacccgtaccggcagcaagggcaagaccaag
caaccggtcctcatgctcctcgacgggcattccctggcatatcgggcgttcttcgcgctc
ccggccgagaacttcaagacggccaccggacagaccaccaacgcggtctacggcttcacc
tcgatgctgatcaatctgctgcgcgacgaggaacccacccacatcgccgccgccttcgac
gtctcgcggaagacgttccgctcggagatgttcccggagtacaaggcgcagcgctccaag
tcgcccgacgagttcaacgggcaggtcgacctcaccaaggaggtcctcgacgcgctgggt
gtcacggtcatggcgatcgagggcttcgaggccgacgacatcatcgcgaccctcgcgacc
caggcgcgcgaacaggacttcaaggtcctgatcgtcaccggcgaccgcgactcgctgcag
ctggtcgacccgtcgaccaccgtgctctacccgcgcaagggtgtctcggacctcacccgc
ttcacccccgaagaggttgagaagaagtacggtctgacccccgcccagtaccccgactac
gccgccctgcgcggcgaccccagcgacaatctcccaggcattccgggtgtgggggagaag
accgcgtcgaagtggattcgcgagtacggatcgctggcctcgctcgtcgatcacgtcgac
gaggtgaagggcaaggtcggcgatgcgctgcgcgccaatctcgcctcggtgcagaccaac
cgtcagctcaccgaactcatccgcgacatgcagctgcccgcgggccccgaagatctcgcg
atggtcggctgggatcgcgaccgcatccaccagctcttcgacgacctcgagttccgcgtc
ctgcgcgaccgcctgttctccaccctcagctcggtcgagcccgaggccgaggcgggcttc
gatctcgacggctcggtcctcggcgccggcgaggtcgcgggatggctcaccgaacacgcc
cgtacgggccggaccggtctcgcggtgaccgcgccgcacgtcgtcgtgggctccgacccg
accggactggcgatcgcggccgccgacggttcgtcggcgtatgtcgacgtgaccaccctg
acgccggaagacgatgcggccctggccaactggctcgccgacccgcaggcgctcaaggct
gtgcacgaggccaagtgggcggtacacgcgctgcgttcgcgcgggtggaagctcgacggc
gtcaccagcgacacctcgctggccgcgtacctcgtccgccccgggcagcggaccttcaat
ctcgacgacctcgccctgcggtacctgcgccgtgagctacgcgccgacaccggggcgggc
gacggccagatgtcgctgctcgacgacgacaccgagggcaaggtcgccgaacagcacatg
ctcgaggcgcgtgcagtgcaggagctcgccgacaccctcgacaccgaactcgaccgcatc
gactccaagccgctgctgaccgagatggagttgccgctgtcgttcgtcctcgccgacctc
gaggccgccggcatagctgtcgacgtcgatcacttcaatgcgctggcacagatgttcaac
gaccggatccgagcggccgccgagtcggcctacgaggtcatcggtgaacagatcaacctc
ggttcgccgaagcagctgcagaccgtgctcttcgacaagctcgacatgccgaagaccaag
aagaccaagaccggctacaccaccgacgcagacgcgctgcagtcgttgtacgagaagacc
gaacatcctttcctcgcacaccttctcgagcatcgcgacgccacgcggttgaaggtcacc
gtcgacggtctgctgaagtcggtggccgacgacgggcgcatccacacgacgttcaaccag
accatcgccgcgaccggccgcctgtcgtcgaccgaaccgaacctgcagaacatcccggtc
cgcaccgaggccggccgcgagatccgtcgcggcttcatcgtgggcacggatcaggattcg
ggcgtgaactacgactgcctgatgaccgccgactacagccagatcgagatgcggatcatg
gcccatctgtcggaggacgaagggctgatcgaggccttcaacaccggggaggacctgcac
aacttcgtcggatcgcgcgccttcggggtgccgatcgacgaggtgaccaccgagatgcgc
caccgcgtgaaggcgatgtcgtacggactcgcctacggcctcagtgccttcgggctcgcg
gcccagctgaagatcagccgtgaggaggccaaggaccagatggaagcgtacttcgcgcgg
ttcggcggtgtgcgggactacctgcacgacgtggtcgccgaagcccggcgcaacgagtac
acggcgaccctgttcggccgccggcgttacctgcccgacctgaacagcgacaactggcaa
cgacgccagtccgcggagcggatggcgctcaacgcacccatccagggcaccgccgccgac
atcatcaaggtcgcgatgatcaacgtgcacaagcgtttcctcgccgagaagctgacgtcg
cgggtgctgctgcaggtccacgacgaactcgtggtcgaggtggccgccggcgagcgcgac
gcggtcgaagccgcggtgcgcgaggagatgggcaacgccatcacgctgtcggtcccgctc
gaggtgtcggtcgggttcggtcggtcctgggacgacgcggcccactga
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