Gordonia alkanivorans: C5O27_21025
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Entry
C5O27_21025 CDS
T05876
Name
(GenBank) endonuclease VIII
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gav
Gordonia alkanivorans
Pathway
gav03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C5O27_21025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_21025
Enzymes [BR:
gav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C5O27_21025
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C5O27_21025
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C5O27_21025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
AZZ83232
LinkDB
All DBs
Position
complement(4621798..4622688)
Genome browser
AA seq
296 aa
AA seq
DB search
MPELPEVAAIADYVDGRAAGLPIRRVDVASLSVLKTADPPYTALTDRIVESVGRVGKYLV
IRTIPGSEATTSEPTLALVIHLSRAGWVRWSEDLSPKPLRPGGKSPIALRVHCGLPGEGF
DVTEAGTQKRLAVWLVRDPGEIDRIAGLGPDALELTGEQFAEILAGTTGRVKNVLTDQHT
IAGIGNAYSDEILHTARLSPFASSKTLKPDQVSALYDAMRGVLTDATGRLEGQTVARLKS
EKRTGLRVHARTGLPCPVCGDTVREVSFADRSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctccctgaggtggccgccatcgccgactatgtcgacggtcgcgcggccgga
ctcccgatccggcgagtcgacgtcgcgtccctgtccgtgctcaagacggccgatccgccg
tacaccgcgctcaccgaccgcattgtcgaatcggtcggccgcgtgggcaagtacctggtc
atccgcacgatcccgggttcggaagcgacgacgtccgagccgacgctggccctggtcatc
cacctgtcgcgcgccggctgggtgcggtggagcgaggatctctcacccaagccgctgcgc
ccgggcggcaagtcgccgatcgcgctgcgggtgcactgcggcctgcccggcgagggattc
gacgtcaccgaggcgggcacccagaagcgcctggcggtgtggctcgtacgcgaccccggc
gagatcgaccgcatcgccggactcggccccgacgccctggaactgaccggggaacagttc
gccgagatcctcgccggcaccaccggacgcgtgaagaacgtgctcaccgaccagcacacc
atcgccgggatcggcaacgcctactccgacgagatcttgcacaccgcgcgactgtcgccg
ttcgcgtcgtcgaaaaccctcaaaccggatcaggtcagcgccttgtacgacgcgatgcgc
ggagtactcaccgacgccacaggccgcctcgaagggcagaccgtcgcccggctgaagtcg
gagaaacgcaccggactccgcgtgcacgcgcgcaccggactgccgtgtccggtctgcggc
gacaccgtccgcgaggtctccttcgccgaccggtccttccagtactgcccgacctgccag
accggtggcaaggtccttgccgaccgccggatgtcacggctactgaaatga
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