Gordonia alkanivorans: C5O27_21920
Help
Entry
C5O27_21920 CDS
T05876
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gav
Gordonia alkanivorans
Pathway
gav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C5O27_21920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gav03021
]
C5O27_21920
03400 DNA repair and recombination proteins [BR:
gav03400
]
C5O27_21920
Enzymes [BR:
gav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C5O27_21920
Transcription machinery [BR:
gav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C5O27_21920
DNA repair and recombination proteins [BR:
gav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C5O27_21920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3450
Sey1_3HB
Motif
Other DBs
NCBI-ProteinID:
AZZ83376
LinkDB
All DBs
Position
complement(4809059..4813015)
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLNERQQKLEQD
LAELEAEGAKADVRRKVRDGAEREMRRMRDSAQRELDGLEEIWDKFVKLSPGDLIIDEKL
YRQLEERYGEYFQGSMGAEAIKKLLETFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTSLKEGAAGEYT
PATADDIERGVYSSPAEAIMAVDRGQLTVQSRIKVRLTGQRPPAEVEAELFPEGWRFGQP
WTTITTLGRVLFNELLPIEYPFVDEQMPKKRQAAIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSMADVLVPPQKAEILDRYEERADGLERKFQRGALTPDERRDALVEIWKQA
TEEVGKAMEDFYPEDNPIIMIPKSGATGNLTQVRNLSGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGINVSL
GEKQPDGSIIRDAHVETSAYARTLAADAVDADGNVIVERGHDLGDPAIEALLAAGIAQVK
VRSVLTCATGTGVCAHCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVQELFEARVPKGVAPIAEVSGRIRLEDDDRFYKITIIPDDGSEEVVIDKIS
KRQRLRVFKHDDGSERLLADGDHVEVGQQLMEGSANPHEVLRVMGPRQVQIHLVNEVQEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDHGATEFLPGSLVERAEFEAANRQVVTEGGEPA
AGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPAG
TGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSNEYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgaactgaagatcggcctggccacggccgacgacatc
cacaactggtcatacggtgaggtcaagaagccggagacgatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgacccgcgactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgaccaaggccaaggtgcgccgtgagcgcatgggccacatcgagctggccgcaccg
gtcacgcacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtgatcaccgccgtcgac
gacgagctgcgtcacaacgagctctcgaccctcgaggccgagatggaggtcgagaagaag
gccgtcgccgatcagcgcgacgccgacctgaacgagcgtcagcagaagctcgagcaggat
ctcgccgagctcgaggccgagggtgccaaggccgacgtgcgccgcaaggtgcgcgacggt
gccgagcgcgagatgcgtcgtatgcgcgactccgcccagcgtgagctcgacggtctcgag
gagatctgggacaagttcgtcaagctctccccgggcgacctcatcatcgacgagaagctg
taccgccagctcgaagagcgctatggcgagtacttccaggggtcgatgggtgccgaggcg
atcaagaagctcctcgagaccttcgacatcgacgccgaggccgagtcgctgcgcgagacc
atccgcagcggtaagggccagaagaagctgcgtgctctcaagcgcctgaaggtcgtcgcc
gcgttccagcagtcgggcaactcgccgctgggcatggtcctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggttcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgtctgatcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggtcgtcgcggccgtccggtcaccgggccgggcaaccgcccgctgaag
tccctgagcgatctgctcaagggcaagcagggtcgtttccgtcagaacctgctgggtaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgccgaagctgatggctctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctcaaccaggcccagaacatcaagtcggccaagcgcatggtcgagcgtcagcgc
cccgcggtgtgggatgtcctcgaagaggtcatctccgagcacccggttctgctgaaccgt
gcacccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagcttcacccgctggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtccgcggaggcgcaggccgaggcacgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcatcggggcgtccgctcgccatgccgcgtctggac
atggtgaccggtctgtacttcctgacctccctcaaggagggtgcggcaggcgagtacacc
ccggcgaccgccgacgacatcgagcgcggtgtctactcgagcccggccgaggccatcatg
gccgtcgaccgcggtcagctcaccgtgcagtcgcgcatcaaggtgcgtctgaccggtcag
cgtccgccggccgaggtcgaggccgagctgttccccgagggatggcgtttcggtcagccg
tggaccaccatcaccacgctgggccgcgtgctcttcaacgagctgctgccgatcgagtac
ccgttcgtcgacgagcagatgccgaagaagcgtcaggccgcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtggttgcccagaccgtcgacaagctcaaggacgtcggcttc
tactgggccacccgttcgggcgtcaccgtgtcgatggccgacgtgctcgtgccgccgcag
aaggcggagatcctcgaccgttacgaggagcgtgccgacggcctggagcgcaagttccag
cgcggtgccctcacgccggacgagcgtcgcgacgcactcgtggagatctggaagcaggcc
accgaagaggtcggtaaggccatggaggacttctaccccgaggacaacccgatcatcatg
atcccgaagtcgggtgccaccggtaacctgacgcaggttcgtaacctgtcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgaccgtcgccgagtacttcatcaacacgcacggtgcccgtaagggtctggcg
gacacggctctccgtaccgccgactcgggttacctgacccgtcgtctcgtcgacgtgtcg
caggacgtcatcgttcgcgagaccgactgtggcaccgagcgcggcatcaacgtgtcgctg
ggtgagaagcagcccgacggctcgatcatccgcgacgcgcatgtcgagacctcggcctac
gcacgcaccctggccgccgacgcggtcgacgccgacggcaacgtcatcgtcgagcgcggc
cacgatctcggcgacccggccatcgaggctctcctcgcggccggcatcgcacaggtcaag
gttcgttcggtcctcacctgtgccaccggcaccggtgtgtgtgcgcactgctacggccgt
tcgatggccaccggcaagctcgtcgacatcggtgaggccgtcggtatcatcgcggcccag
tcgatcggtgagcccggtacccagctgacgatgcgtacgttccaccagggtggcgtcggt
gacgacatcaccggtggtctgccgcgtgtccaggagctcttcgaggcccgcgtccccaag
ggtgtcgcgccgatcgcggaggtctccggccggattcgcctcgaggacgacgaccgcttc
tacaagatcacgatcatcccggacgacggttccgaagaggtcgtcatcgacaagatctcg
aagcgtcagcgtctgcgcgtgttcaagcacgacgacggttccgagcggctcctcgccgac
ggtgaccacgtcgaggtcggccagcagctcatggagggctcggccaacccgcacgaggtc
ctgcgcgtcatgggtccccgtcaggtgcagatccacctggtcaacgaggtccaggaggtc
taccgcagccagggtgtgtcgatccacgacaagcacatcgagacgatcgtccgtcagatg
ctgcgtcgcgtgacgatcatcgatcacggtgcgaccgagttcctgcccggttcgctcgtc
gagcgtgccgagttcgaggcggccaaccgtcaggtggtcaccgagggtggtgagcccgca
gccggacgtccggtgctcatgggtatcaccaaggcctcgctcgcgaccgagtcgtggctg
tcggcggcgtcgttccaggagaccacgcgtgtcctgaccgacgcggcgatcaacagccgc
agcgacaagctgatcggtctgaaggagaacgtgatcatcggtaagctgatcccggccggt
accggtatcaaccgttaccgcaacatccaggttcagccgaccgaagaggcacgtgccgcg
gcctacgcggtgccgtcgtacgacgacacctactacagcccggacggcaccttcggtgct
ccggccggcgctgcggtgccgctggacgactacggtttctccaacgaataccggtaa
DBGET
integrated database retrieval system
