Gimesia aquarii: V144x_21160
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Entry
V144x_21160 CDS
T09973
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gaw
Gimesia aquarii
Pathway
gaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V144x_21160 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaw03019
]
V144x_21160 (deaD)
03009 Ribosome biogenesis [BR:
gaw03009
]
V144x_21160 (deaD)
Enzymes [BR:
gaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V144x_21160 (deaD)
Messenger RNA biogenesis [BR:
gaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V144x_21160 (deaD)
Ribosome biogenesis [BR:
gaw03009
]
Prokaryotic type
rRNA helicases
V144x_21160 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDT96658
UniProt:
A0A517VUH6
LinkDB
All DBs
Position
complement(2550142..2551899)
Genome browser
AA seq
585 aa
AA seq
DB search
MSTEVSLQANFKDLALCQPVLDSLEDLGYDTPTPIQAQTIPTLLDGRDLVGQAQTGTGKT
AAFALPLLSKIDLNLKAPQVLVLAPTRELAIQVAESFKKYGAKLKGLQVLPIYGGADFKT
QLQPLKRGVQVVVGTPGRVMDHMRRGTLKLDALRCLVLDEADEMLRMGFIDDVEWILEQT
PDQHQTTLFSATMPAAIRRIAGNYLQTPAEVTVKVKTRTADTIRQRHWVSRGLHKLDALT
RILEAEEIDGVLIFVRTKTITSELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVN
IVIATDVAARGLDVDRISHVINYDLPGDSESYVHRIGRTGRAGRTGEAITFVSPRETRSL
QGIERAIKHKIERMELPPIDKINERRKERFKESVTKAMNSRDFEFYQTLLTEYQSESNHS
EIQIAAALACMAQGKRPLLLKETLQKEKLKKQREPMGNRQPRTERQFQKERPPRKRTTNE
APEEGMERFRLQVGHSHGVKPGNIVGAIANEAELDSKYIGRINIFDDYSTVDLPEGMPRD
IFRALKSVWVAGQQLNISRFEQFDSSSPVKRKRFKGKHKHKHQKV
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacagaagtctcattacaggctaatttcaaagatttagcgctctgccaacccgta
ttagattcactggaggatcttggatacgatacccctacccccatccaggcacaaacgatt
ccgacgttactggatggacgagatctggtaggacaggcgcaaacaggaacgggaaaaaca
gctgcgtttgccctgccattgctttcgaaaatcgatttaaatttaaaggcaccacaggtc
ctggtcttagctcctacaagagagttggcaattcaggttgcagaatcgtttaaaaaatac
ggtgctaaactaaaaggcctgcaagtcttacctatctatgggggtgcagactttaaaact
caattacaacccctcaaacgtggagtacaggtggttgtgggaactcctggtcgcgtcatg
gatcacatgcgtcggggaacattgaagctggacgccttacgctgtctggttctagacgaa
gccgatgaaatgttgcgaatgggctttatcgacgatgtggaatggattctggaacaaaca
ccagatcaacatcaaacaaccttgttttccgctaccatgccagcagccatcagacgcata
gcaggaaactatcttcaaactccggcagaagtgacagttaaagtaaagactcggacggct
gataccattcgccagcgacattgggtatcaagaggcctccataaactggatgcactcaca
cgcatcctggaagcagaagaaatcgatggtgtgctgatctttgtacgtaccaagacgatt
accagcgaactctccgaaaaattggaagcccgtggattcctggcagctcccttaaatggg
gatattccccagaaacaacgcgaacgcacggtgggccgtctcaaagcaggacacgttaat
attgtgattgccactgatgtcgccgcgcgaggattggatgtggaccggatcagccatgtc
atcaattacgatctgccgggagattcagaatcttatgtgcatcgcatcggtcgtaccggt
cgcgcaggtcgaacaggcgaagcaattacctttgtttctcctcgtgaaacgcgatcactc
caaggcattgaacgggccatcaaacacaaaattgagcgtatggagctacctccgattgat
aagattaatgaacgacgcaaggagcgtttcaaagaatcggtaaccaaagcgatgaattca
cgagactttgaattctaccagaccttgctgacggaatatcaatcggaatcgaatcattcc
gagattcagattgccgcggcgttagcttgcatggctcagggtaagcgaccattattattg
aaagagactctacaaaaagagaaacttaaaaaacaacgtgagccaatggggaacaggcaa
cctcgaaccgaacgtcagttccaaaaagagcgtccccctcgaaaacgtactaccaacgaa
gcccctgaagaaggcatggagcggtttcggctccaggtcgggcatagccatggtgtgaaa
ccgggcaacattgtgggagccattgctaacgaggcagaactggacagcaaatatatcggc
cgaattaacatctttgatgattacagtacggttgacttaccagaagggatgcctcgcgat
attttccgcgctttgaaaagtgtctgggttgcaggtcagcagttgaatatttctcgattc
gaacaatttgattcgtcttcgcctgtaaagagaaaacgattcaaaggcaagcataaacac
aaacatcagaaggtttga
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