Gimesia aquarii: V144x_34510
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Entry
V144x_34510 CDS
T09973
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gaw
Gimesia aquarii
Pathway
gaw03030
DNA replication
gaw03430
Mismatch repair
gaw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V144x_34510 (dnaE)
03430 Mismatch repair
V144x_34510 (dnaE)
03440 Homologous recombination
V144x_34510 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gaw03032
]
V144x_34510 (dnaE)
03400 DNA repair and recombination proteins [BR:
gaw03400
]
V144x_34510 (dnaE)
Enzymes [BR:
gaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V144x_34510 (dnaE)
DNA replication proteins [BR:
gaw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V144x_34510 (dnaE)
DNA repair and recombination proteins [BR:
gaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V144x_34510 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
TRF
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QDT97968
UniProt:
A0A517VY90
LinkDB
All DBs
Position
4324990..4328505
Genome browser
AA seq
1171 aa
AA seq
DB search
MSDPRPFAHLHCHTHFSMLDGASRIPEMVSKVKEAGMNSLAITDHGNLYGAMDFYQQCRS
QEINPILGLEAYIAPRSRFEKGASRMKEASFHLTLLAQNRKGFENLIKLSSTSYLEGFYY
KPRIDKEILEAHSEGLILLTGCAAGELSHHILGEDWEEAEKLCAWYEKVFGDRVYMEIQN
AGLEIQRQCLEGTVDLANKMGLPLVASNDAHYVDQKDAFAQDVLLCVSTRSVVSDEKRMK
MTGDQFFVRTQDEMYDAFPGLEHAVARTQELADRVDIQMSDKKYYPVFQPPDEMTDTQYL
RKLCEERLPLKYGDELTQEHWDRLDLELGVIEQMGYDSYFLIVWDFVQFAESEKIPCTAR
GSACGAIVAYLLGMSQVCPLKYDLLFERFLDPSRSEPPDIDIDFCRDRRQLVIDYTKQKY
GEHSVAQIGTFGTLKAKAAIRDVGRALGVPLARVNEIAKMIPETLGIKLKDALKESPDLQ
AAYDQDPDIKQLLDLAMQLEGLSRSAGTHAAGVVVADLPLSEVVPLQMITGKTDIITQWD
GPTVESVGLLKMDFLGLRNLTILDKAVQNVKKHCNIDIDPHKLPLDDKKTFALLQRGETK
GIFQLESGGMRDLLTKMKPDKFEDIIATSALYRPGPLEGGMVMQYVDVKNDRIPIPKVHP
VVDEILNETYGVMVYQEQVMRILNRVGGIELSAAYRCIKAISKKKLKTIAEFKDQYISGA
KERGVDEQLAVDLFDMIEKFAGYGFNKSHSTAYGGVAYATAYLKAHYPKEFMAALLSCGM
ESHERINEHVDDCRRMKLEVLPPDINRSDVEFSVDGEKIRFGMGAIKGVGEQALEEVVKE
REENGPFTSIFNLCERVDPKTLNKSMLEILIKAGALDSLGGHQAQLMLTVERAVQSAINI
HRDRARGQKSLFDDDPVDDEVESSDNALLPEAEEWPRAQKLAAEKEVFGFYLTSHPLAEV
GDTLTKYAQHKTNELSEMEDREEVILAGMISSIKNAATKKASKNGHTRYVNFDLEDPHGL
VRCIMWPEQFARVGEKVKLEEMVIIKGKIDKRGREPNVVVDQLFTLNDARKQFTDRLAIN
FKRGVHTRQDMVNVHDILSQFPGQTEVILVVDSVDQEKSDTQLRYVLNPPGNLRVSCSQE
FESQLSAVIGESHIHFHTTNKKKSMNGSIGR
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacccacgcccttttgctcatttgcattgtcatacgcactttagcatgctggat
ggcgccagccgcataccggaaatggtaagcaaagtcaaagaagccggtatgaattcgctt
gcgatcacagatcatggcaatttatacggagccatggacttttatcagcaatgccgcagt
caggaaatcaaccccatcttagggttggaagcttacattgcaccgcgcagccgctttgaa
aaaggggcctcgcgaatgaaggaagccagctttcatctgacattgctggcacaaaaccgt
aagggattcgaaaatctgatcaagctctcttccacctcctatctcgaaggcttttattat
aaacctcgcatcgataaggaaatcctggaagcacatagcgaaggtctgattctgcttacg
gggtgtgcagccggtgaactatcgcaccatattcttggtgaagattgggaagaggcggaa
aagctatgcgcctggtatgagaaagtatttggtgaccgcgtttatatggaaattcagaat
gcgggtctggaaattcaaagacagtgcctggaaggaaccgtcgatctggccaataaaatg
ggcctgcccttagtcgcttctaatgatgcccattacgtagatcaaaaggatgctttcgcg
caagatgtgcttttgtgtgtcagcacgcgttctgtcgtcagcgatgaaaaacgaatgaaa
atgactggcgatcaatttttcgtccgtactcaggatgaaatgtatgacgcatttccaggt
ttggaacacgcggtcgcacgcactcaggaactggctgatcgagtcgacattcagatgtct
gacaaaaagtactatccggtctttcaaccacctgacgaaatgactgacacacaatacttg
cgaaaactgtgtgaagaacgcttaccattaaaatatggtgatgagctgacgcaggaacat
tgggatcgcctcgacctcgaattaggcgtgatcgaacaaatgggctacgacagttacttt
ctaattgtatgggatttcgtgcaatttgcagaaagtgaaaaaatcccttgtactgcgcgt
ggttcagcctgtggtgcgattgtggcatacctgctgggtatgtcacaagtctgccctctg
aaatatgacttgctgtttgaacgattccttgatcccagtcgaagcgagccaccagatatc
gacatcgatttctgccgtgaccgacgccagttggtcatcgattatacgaagcagaaatac
ggcgagcacagtgtagcgcaaattggaacatttggtacgctcaaagcaaaagccgccatt
cgagatgtaggccgcgcgctgggagttccactggcgcgtgtcaatgaaattgcaaaaatg
attccggaaacactgggaatcaaactcaaagatgcactgaaggaaagtcctgatctgcaa
gccgcctatgatcaggacccagatattaaacagctgctggatctggctatgcaacttgag
gggttgagccgtagtgccggtacgcatgccgcgggagtcgtagtcgccgatttaccactg
tccgaagtagttccactccaaatgatcaccgggaagactgatatcattactcagtgggat
ggccccaccgtggaatcagtgggcctgctcaaaatggacttcctggggttacgcaacctg
acgatcctcgacaaagccgttcaaaacgtcaaaaaacattgcaacatcgacattgatcca
cacaaacttccgctggatgataaaaaaacattcgcgttattacagcggggagaaaccaaa
ggtatcttccagttggaaagtggcggcatgcgcgacttgctgacaaaaatgaagccggac
aagttcgaagacattattgctacttctgccttgtatcgccccggtccgctggaagggggc
atggtgatgcaatatgttgatgtcaagaatgaccgcattccgattccgaaagtacatcct
gttgtagatgaaattctcaatgaaacctacggtgtgatggtttaccaggaacaggtcatg
cggatcctgaaccgagtcgggggaatcgaactttctgctgcgtatcgttgtattaaagcg
attagcaagaaaaaactaaaaaccatcgccgaattcaaagaccagtacattagcggcgcc
aaagaacgaggagtcgatgaacaactggcggtcgatctgtttgacatgatcgaaaaattt
gccggctatggatttaacaaatcacattcgaccgcttatggaggcgtggcctatgcaacc
gcttacctcaaagcacattatccgaaggagttcatggctgcattgctttcatgtggtatg
gagagccatgaacggatcaacgaacatgtcgatgattgccgtcgcatgaaacttgaagta
ttgccgcctgatattaatcgatctgatgtcgaatttagtgtggatggtgaaaaaattcgc
tttggcatgggtgcgatcaaaggcgttggcgaacaagctctggaagaggttgttaaagaa
agagaagaaaacggacctttcacaagtatttttaatctctgtgaacgcgttgatcctaaa
acactaaataaaagtatgcttgaaattctgatcaaagcgggcgcactcgacagtctggga
ggccatcaggctcagttgatgcttacagtcgaacgcgctgtgcaatcagcgatcaatatt
caccgtgatcgggcccgcggacaaaagagtctgtttgatgatgatcctgtcgatgatgaa
gttgaatccagtgataacgcattactaccagaagcggaagagtggccgcgagcccagaaa
ctggccgcagaaaaagaagttttcggtttttaccttacatcacatccattggctgaggtg
ggagatacccttaccaaatatgcacaacataagaccaatgaactgtctgaaatggaagat
cgcgaagaagtcatcttagcaggtatgatttcttcgattaaaaatgcggccaccaaaaaa
gccagcaagaacggtcatacacgttatgttaactttgacttggaagacccccatggttta
gtacgttgcatcatgtggccagaacaatttgcccgcgtgggcgaaaaggtcaaactggaa
gagatggtaatcatcaaagggaaaattgataaacgaggcagagagcccaatgtggttgtc
gatcagctctttactttgaatgatgcccgaaaacagtttacagaccgcttggcgattaac
ttcaaacgaggcgtccatacccgccaggatatggtcaatgtgcacgatattttatctcaa
tttcctggccagactgaagtcattctggtagtcgactccgtcgatcaggaaaaatcagac
acacagttacgctacgtcttgaatcctcccggaaatctacgtgtttcctgtagtcaggag
tttgaatcgcagctctcagccgtgattggagagagccacattcacttccatacaacaaac
aagaaaaaaagcatgaatggaagtattggccggtag
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