Gimesia aquarii: V144x_43760
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Entry
V144x_43760 CDS
T09973
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gaw
Gimesia aquarii
Pathway
gaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V144x_43760 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaw03019
]
V144x_43760 (rhlE_2)
Enzymes [BR:
gaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V144x_43760 (rhlE_2)
Messenger RNA biogenesis [BR:
gaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V144x_43760 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
CMS1
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QDT98867
UniProt:
A0A517W0T5
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All DBs
Position
5526104..5527435
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AA seq
443 aa
AA seq
DB search
MKTFKELDLLEPIQCALADEKYVTPTPIQVQTIPAALQEHDVLGCAQTGTGKTAALALPI
LNRLGQTNRKAVPNHPFALVLAPTRELAIQIGESFATYGQHLKLRQALVYGGVNQGKQVR
ALNRGAHILVATPGRLLDLINQGHIKLNQLETFVLDEADRMLDMGFLPDLKRIIEELPDQ
RQSLFFSATLPPKITELAQSLLRNPVNVNVTPKSTSVEQIEQRIVYLDRRNKLTLLQKVL
DSKDVERALVFTKTKRTANTLAQQLMRCRINATAIHGNKSQNARQRALEAFRNKQVQVLV
ATDVAARGIDIDGITHVVNFDLPIEPEAYVHRIGRTGRAGAAGIALSFCTDDERRELRAI
EQLIGKKIPIDRNHPQPGRRDSKPLNAPSERRKPSRKQQASKKPGHSQRARNRRPGFAVD
GADKPKRRRRKGQTPRQRTKQIN
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacttttaaagaacttgacttattagaacccattcagtgcgcactggccgatgaa
aagtatgtaacgccgactcctattcaggtacaaacgattccagccgctctgcaagaacat
gatgtcttaggttgtgcccaaacgggtacaggcaaaacagctgcgctcgccttaccgatt
ctgaaccgactgggacaaaccaaccgcaaggctgtcccaaatcatcccttcgcacttgtg
ttggctcccacacgagaactggcaattcaaattggagagagttttgcaacctacggccaa
catcttaagctacgacaggctttggtctatggaggcgtgaatcagggaaaacaggtgcga
gccttaaatcggggcgcacatattcttgtcgccacaccgggacgcttacttgacctgatc
aaccaggggcatatcaaattaaatcaattagagacattcgttctggatgaagcagaccgg
atgctcgacatgggatttctgcccgacctcaaacggattattgaagagctaccagatcaa
cgtcagtcactcttcttttccgctacgttgcctcccaaaattacagagcttgcacaaagt
ttgctcagaaatcccgtgaacgtcaatgtgactccgaaatcaactagtgtagaacagatc
gagcaacgtattgtataccttgatcgaagaaataagttgacactcctgcaaaaagtactt
gattctaaagacgtcgagcgggctttggtatttacaaaaacgaaacgcactgccaacaca
cttgcccagcagttaatgcgatgtcgtattaacgctacagcaatccacggtaacaaatca
caaaacgcgcgacaaagggccttagaagcatttcgaaacaaacaagtgcaggttttagta
gcaactgacgttgccgcaagaggtattgatatcgatggaatcacacacgttgtcaatttt
gatctacccattgaaccggaagcctatgtgcatcgcattggacgaacggggcgggcgggc
gcagcgggaattgccttgtcgttttgtactgatgatgaacgtcgtgaattacgagctatt
gagcaattgattggcaaaaaaattcctatcgacagaaatcatccacagcctggtcgtcgg
gactccaagcctttaaatgcaccgagtgaacgacgaaaaccatctcgcaaacagcaggct
tcaaaaaaaccgggacactctcaaagagcccgcaatcgccggcctggatttgctgtggac
ggggcagacaaaccaaagcgcagacgccgtaaagggcaaacaccacgacaacgtaccaaa
caaataaattaa
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