Gimesia aquarii: V144x_44050
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Entry
V144x_44050 CDS
T09973
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gaw
Gimesia aquarii
Brite
KEGG Orthology (KO) [BR:
gaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gaw03016
]
V144x_44050 (rtcB)
Enzymes [BR:
gaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
V144x_44050 (rtcB)
Transfer RNA biogenesis [BR:
gaw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
V144x_44050 (rtcB)
Prokaryotic type
tRNA splicing ligases
V144x_44050 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDT98895
UniProt:
A0A517W0W5
LinkDB
All DBs
Position
complement(5568658..5570049)
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AA seq
463 aa
AA seq
DB search
MNSRQLLKIGVPQYCLKTAKTAIQKAVADNKIRGKELKERVQSVVSRPEDFLEDSAFSQL
AFELVDDNREEVFEPIDYQVWGKDGIDDGALSQMDLACHVPSARGAALMPDAHHGYGLPI
GGVLALEDAVIPYAVGVDIACRMKLSVLDISVDSLDKKRHQFIDAINRGTAFGVGAAHEK
RQHHAVMDADWTVSKVTREKKDKAWKQLGSSGSGNHFVEFGIVTFTEDDEELGLTAGEYV
ALLSHSGSRGAGAAVCSTYSSIAQSRLHKRHHKLGRLAWLEMDSEAGQEYWAAMNLMGEY
AAANHAVIHENVSELLGSKVISGVENHHNFAWKEEHGGKEVYVHRKGATPAASGELGVIP
GSMADPAFVVRGKGNAASLNSASHGAGRCMSRRKGKEKYRWNAVKNDLEKRGITVISAGA
DEVPGVYKNIMEVMAEQQDLVEIVARFNPKIVKMCGDGSRAED
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaactctcgacaattgctgaaaattggtgttccacagtattgtttgaaaacggccaaa
acggcgattcaaaaagcagtagcggataataaaattcgtggtaaagaattgaaggaacgc
gttcaaagcgtggtaagtcgtccagaagattttttggaagactctgccttttcgcaactg
gctttcgaattggtagacgataatcgagaagaagttttcgaacctatcgattaccaagtt
tggggtaaagacggaatcgatgatggtgcgctatcgcaaatggacctggcatgccatgtt
ccttccgcacgcggtgctgcattaatgcctgatgcgcatcacggctatggcttaccgatc
ggaggagtgcttgcactggaagacgcagtgattccatacgctgtcggtgtggacattgct
tgccgcatgaagttgtctgtattggatatctcagtcgattctctggataagaaacggcat
cagtttattgatgccatcaatcgaggaacagcatttggtgtaggcgctgctcatgaaaaa
cgacaacatcatgctgtgatggatgcagactggacagtctctaaagtgactcgtgagaaa
aaagataaagcatggaagcaattgggatcatcgggttctggtaatcactttgtcgaattt
ggtatcgtcaccttcacggaagacgatgaagaacttggtttgaccgccggtgaatatgtg
gcactgttgagccatagcggtagtcgtggagcaggagctgcggtgtgcagtacttattct
tcgattgcgcaatcacgtttgcataaacgacatcataagctgggacgtctggcctggttg
gaaatggattctgaagcaggacaggaatactgggctgcgatgaatttgatgggtgaatac
gcggctgcaaaccatgctgtgattcatgaaaatgtttccgaactgctgggaagcaaagtg
atttccggagtggaaaatcatcataactttgcctggaaagaagagcatggcggaaaggaa
gtttacgtacaccgtaagggggcaaccccagcggcgtctggtgagctgggtgtgattccc
ggttctatggctgatccggcgtttgtggttcgtggaaaaggaaatgcagcgagcctgaat
tctgcatcacatggtgcggggcgttgtatgtctcgtcgaaaagggaaagagaagtatcgc
tggaatgccgttaaaaacgatctggaaaaacgaggaatcactgtgatttctgcgggagcc
gatgaagttcccggtgtttataaaaacatcatggaagtcatggcagaacaacaggatctg
gtggagattgtcgcacgtttcaatccaaagattgtgaaaatgtgcggtgatggaagccga
gctgaagattga
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