Gimesia aquarii: V144x_45020
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Entry
V144x_45020 CDS
T09973
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gaw
Gimesia aquarii
Pathway
gaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V144x_45020 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaw03019
]
V144x_45020 (rnr)
03016 Transfer RNA biogenesis [BR:
gaw03016
]
V144x_45020 (rnr)
Enzymes [BR:
gaw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V144x_45020 (rnr)
Messenger RNA biogenesis [BR:
gaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V144x_45020 (rnr)
Transfer RNA biogenesis [BR:
gaw03016
]
Prokaryotic type
tRNA degradation factors
V144x_45020 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QDT98992
UniProt:
A0A517W158
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All DBs
Position
complement(5692545..5694827)
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AA seq
760 aa
AA seq
DB search
MPDFEKKILDYVTRPGYTPVREKSLLKKVGGSKSTAAEFEQAMESLRARKDILVSDSGLI
RPVKKEGWIAGTIKKTNSGAGYLIPHHKPDDIAHDQRHAGDLYISERDLGDAQTGDEVYA
TVVNRRRSGGQICGRVVEIIERASTTFVGTYFEAQGEGYVHVDGKIFNSPIHVGDPGAKG
VRSDDKVVIDILRFPSKNYLGQGVISKVLGPHGKPGVDLLSIIYEFGIPMDFPEEVLEAA
REQASLFDEKKWGDRRDLTKETIVTIDPVDARDFDDAISLSRDERGHWLLGVHIADVAHF
VKEGSTLDREAKNRGTSVYLPGRVIPMLPEVISNGLASLQEGQVRFTKSALIEFTAEGIP
VHTEFANSVIKVTQRFAYEQVMPIVQGRDQEGGNVSTPVRSLLKNMHHLAMILRGRRFSA
GALELHLSEVRLTFDAKHRVSGAVEREHDESHQIIEEFMLAANIAVAEAFNDRGLRFLRR
VHPSPELPRQLAFADFVNALGYTLKKAQSRKDLQKIVEQVHGTPVEQAINYALLRSLKQA
EYTDEELGHYALAVDHYCHFTSPIRRYPDLTIHRMIDEIIERPEKGKGQSPQGLRQLGQE
LSLRERRAEAAERELTKVKLLTWMIDNEIKTLNTMITGVETFGLFCRGTDVPVEGLLHIS
RLGKHDYFNVDSAKFSIVGERTGQEYRIGDLLTVEVEKIDLDRRELDFRLPNSKKAGKPA
KNGASQRGGKSSKSFSKVKGNTKKNSRKLKSQRGKKKKRK
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgcccgattttgagaagaaaattctcgattacgttaccaggcccggttacacacctgtg
cgtgaaaaatcgctactcaaaaaagtgggaggctccaaatcaacggctgcggaatttgag
caggccatggagagtctgcgtgccagaaaggatattctggtttctgattccggcttaatc
cgtcctgttaagaaagaaggatggatcgcgggcacgatcaagaaaaccaattccggtgcg
ggatacctgattccccatcataagcccgatgatattgcccacgatcaacgtcacgcggga
gatctttatatctccgaacgtgatttgggtgatgctcaaacgggagatgaagtctacgct
accgttgtcaatcgcaggcgaagtggtggccagatttgtggccgggtggtagagatcatc
gagcgggcttcgaccacatttgtgggaacgtattttgaggctcaaggagaaggttatgtc
cacgttgatggcaaaatctttaattctccgattcacgtgggtgacccgggggccaaaggg
gtgcgctcagatgataaagtagtgatcgatatcctgcggtttccctcgaagaattatctt
ggccagggtgtgatttcgaaagtacttggtccccatggtaaaccgggcgttgatctactt
tcgattatttatgaatttgggattccaatggattttccagaggaagtactcgaagcggcc
cgcgaacaagccagtttgtttgatgaaaaaaaatggggtgatcgacgagatttgacaaaa
gagaccattgtcacaatcgatcctgtagacgcgcgggattttgatgacgcgatttcttta
agccgagacgaacgaggtcattggctgttaggagttcatattgcagatgtggctcatttt
gtcaaagaaggttctactctggaccgtgaagcgaaaaatcgtggcactagtgtctatttg
cctggacgagtcattccgatgttgccagaagtcatctcgaatggattagcgagtttgcag
gaggggcaggtacggtttaccaaatctgcgttgatcgaattcacggcagagggaattccc
gtacatacggaatttgcaaattcggttattaaagtcactcagcgttttgcctatgaacag
gtcatgccaatcgtacaagggcgtgatcaggaaggcggtaacgtttccactcccgttcgt
agtttgctgaaaaatatgcatcatttggctatgatcctgcgtggacgccgattttcagcg
ggggcgttggagttacatctttcggaggtcaggcttacatttgatgccaaacaccgcgtg
agtggtgcggttgagcgtgaacatgatgaaagccaccagatcatcgaagagtttatgctg
gcagcaaatattgcggtggcagaagccttcaatgaccgcggacttcgatttctgagacgc
gtgcatccctctcctgagttgcctcgccagttggcatttgcagacttcgtgaatgccctg
gggtacactttgaaaaaggcgcaaagtcgtaaggaccttcagaagatcgttgagcaggtg
catggcacacccgttgaacaggcgattaattatgctttgcttcgtagcttaaagcaggct
gagtacacagacgaagagttaggtcactatgcactggcagtagatcattattgtcatttt
accagtcccattcgtcgctatcccgacttaaccattcatcggatgatcgacgaaattata
gaacgacccgagaagggcaaaggacaaagtccacaaggattaaggcagttaggtcaggaa
ctttccttgcgggaacgacgggcagaagcggcagaacgagagctgacgaaagtaaaacta
cttacttggatgatcgataatgaaattaaaactctcaatacgatgatcacaggagtcgaa
acttttggtctgttttgcagagggacggatgtaccagttgaagggctgttacatatcagc
cgactgggaaagcatgactactttaacgtcgactctgctaaattcagtattgtcggtgaa
cgaacaggacaggaatatcgaatcggtgatttattgactgtcgaagttgaaaagattgat
ctggaccgtcgcgaactggactttcgtctgccgaactcgaaaaaagcggggaaacccgca
aagaacggtgcttcacaacgaggagggaagtcgtccaagtccttttcaaaagtaaaagga
aatacaaaaaagaacagccgcaagctgaaatcacaacgaggcaaaaagaaaaaaagaaaa
tag
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