Gimesia algae: Pan161_08090
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Entry
Pan161_08090 CDS
T09989
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
gax
Gimesia algae
Pathway
gax02020
Two-component system
gax02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gax00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pan161_08090 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Pan161_08090 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gax03021
]
Pan161_08090 (rpoN)
Transcription machinery [BR:
gax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pan161_08090 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
HTH_23
LacI
Motif
Other DBs
NCBI-ProteinID:
QDT89182
UniProt:
A0A517V873
LinkDB
All DBs
Position
complement(1042312..1043802)
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AA seq
496 aa
AA seq
DB search
MHLNISQQMKLGQQMKLAPRMIQSMEILQLPLQALEERIDQELEENVCLERISEEENTPD
TETEFMRDQANSDSNSHEIDEREIDAGKDQNNESDFERLLEMAEQWPEDNVTSATKPSSN
RISDDIERNNDAVANITERQQTINEYLVEQFHYFSCSPEVKEFGEYLIQNLDHNGRLQSS
LPEIVQVYGQKITQEEAETALQLIQKCDPPGVGARDLQECLLLQLKPDAPYRDVLVTLIT
SHLDDLGQNRLPVIQRKTGYSIDMIKNAMSYLRYLDPFPGRGFESEPVLKVTPDVFVKLD
KDGKYVVELENEYTPPLRISRRYAEILRNKTDDQTKDYIKKKIDAAKWLIEAIEQRHSTL
KRVAQAIVDFQTEFLDNGPEFIIPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLK
RFFGGGTKTSDGEDVAWGIIRLKLKEIIDGEDKNKPLSDDALVDALSREGYNLARRTVTK
YRKAMNIPSSRQRREY
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgaatatttcgcaacaaatgaaactgggccagcagatgaagctggcccccagg
atgatccagtccatggagatcctgcagctccctttacaggcgctggaagaacgcattgat
caggaactggaagagaatgtctgcctggaacggatcagcgaagaagaaaatacacctgat
acagagactgaattcatgcgggatcaggctaactctgattccaacagccatgaaatagac
gaaagagaaatcgacgccggcaaagatcagaataacgaatccgattttgaacgactgctg
gagatggccgagcagtggcctgaagacaatgtgacctccgcgaccaaaccttcttccaac
cgtatcagcgatgatattgaacgcaataacgatgcggtcgctaatattaccgaacgacag
cagacgatcaacgaatacctggtcgaacagtttcattacttcagctgctctccggaagtc
aaagaatttggcgaatacctgattcagaacctggaccataacggccgtctacagagttcc
ctgcccgaaatcgtgcaggtttatggacagaaaattacacaggaagaggccgaaactgcg
ctgcaactgattcaaaaatgtgatccgcccggtgtcggtgcccgagacctgcaggaatgc
ctgctgttgcaattgaagccagatgccccgtatcgcgatgttctggtcactctgatcact
tcccacctggatgacctgggacagaatcgcctgcccgtcattcagcggaaaaccggttat
tcgatcgacatgattaagaacgccatgtcatatctgcgttatctggacccgtttcccggt
cgtggttttgaatcagaaccggtacttaaggtgacgccggatgtatttgtcaaactggat
aaagacggcaaatacgtggttgaactggaaaacgaatacacgcctcccctgcgtatcagc
agacgttacgccgagatactgcgtaacaaaaccgacgatcagaccaaagactatatcaag
aagaaaattgatgctgccaaatggttgatcgaagccatcgaacagcgacacagtacgctg
aaacgggtcgctcaggcgattgtagacttccagactgagttcctggataacggccctgag
tttatcatcccgttaaaaatgcagcagattgccgacgtcgtcggagtgcacgtgacaacc
gtctcccgcgcagtcgatgacaaatggatccagactccccgcgggctgtatccgctcaaa
cgcttctttggcggcggaaccaagacctccgacggtgaagacgtcgcctggggtattatt
cgtctgaagctcaaggaaatcattgatggggaagataagaataagccccttagcgacgat
gccctggtggatgccttatctcgggaaggctataacctggcccgcagaacagtgaccaag
tatcgcaaagcaatgaatatcccgtcatcacgtcaacggcgcgaatattaa
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