Gimesia algae: Pan161_30260
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Entry
Pan161_30260 CDS
T09989
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gax
Gimesia algae
Pathway
gax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan161_30260 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gax03019
]
Pan161_30260 (rne)
03009 Ribosome biogenesis [BR:
gax03009
]
Pan161_30260 (rne)
Enzymes [BR:
gax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pan161_30260 (rne)
Messenger RNA biogenesis [BR:
gax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pan161_30260 (rne)
Ribosome biogenesis [BR:
gax03009
]
Prokaryotic type
rRNA processing factors
Pan161_30260 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
CHP02642
Motif
Other DBs
NCBI-ProteinID:
QDT91369
UniProt:
A0A517VEF4
LinkDB
All DBs
Position
3962507..3964069
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AA seq
520 aa
AA seq
DB search
MKKEMLINVLQPEESRIAIVEDGILEELYVERNSLENLVGNIYKGRVVNIEPSIQAAFVD
FGVGRNGFLHVSDIEHQYYKHLTEQGDGNGKPGRGRNQKGRRVNERSVANKPPIQEILKR
GSEVLVQVIKEGIGNKGPTLSTYISIPGRYLVIMPGLQRVGISRKIADEDVRKDLRTILT
QLAPPPGLGFIVRTAGIDRTADDLKRDLNYLLRLWGTIVGRIKKLPAPVEIYSESDMMIR
TIRDIYNSEIDTLYIDEPTAYQRARDFMKVVLPKHVNRVKHYTGNDPIFYNSKLDDEICS
IQNRHVPMKGGGSIVIDQTEALVAIDVNSGNYRADDNAEKTAFKVNMKAAEEISRQIRLR
DLGGVIVIDFIDMREEKHRRSVERRLRELVKRDRARTKVLRISPFGLIEMTRQRIRPSLR
RSMYEDCPSCRGTGQVKTAESMAIEVMRTLMTTVNKKNISRLVLNVHENVANYLNNKRRK
DITQLEETAQTSIIINARTDVEPEHLMTRCYDDIGNEVNF
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggaaatgctgattaatgtcctccaaccggaggaaagtcgaatcgccatcgtt
gaagatggcattctcgaagaactttatgttgaacgaaacagcctcgaaaacctggtagga
aatatctacaagggaagagttgtcaacatcgaacccagcattcaggctgcgtttgttgat
tttggtgtcggccgaaacggcttcctgcatgtcagcgatattgagcatcaatattacaaa
cacctcaccgaacaaggtgacggaaacggtaaaccaggacgcggtcgaaaccagaagggt
cgccgcgtgaatgaacgcagcgttgccaacaaaccccccattcaggaaattctgaaacgg
gggagtgaagttctggtacaggtcatcaaagaagggattggcaataaaggccctaccctc
tcaacttatatcagtattcccggacgctacctggtgatcatgcctggactgcaacgggtg
ggtatcagccgcaaaattgctgatgaagatgtacgtaaagacctgagaacaattctaacc
caactggcccctccaccgggcctcggatttatcgtgcgtactgccgggatcgaccggact
gctgatgatctcaagcgggacttaaactatctgttgcgcctctggggaaccattgtaggt
cgtattaaaaaactacccgctcccgtcgagatttattcggagagcgatatgatgatccgg
acgattcgcgacatctataacagcgaaatcgatacgctctacatcgacgaaccgacggcg
tatcagagagccagagactttatgaaagtcgtgctgcccaagcacgtcaatcgggtcaaa
cactacactggcaacgaccccatcttctacaacagtaaactggatgatgaaatttgcagc
atccagaatcgccatgtccccatgaaagggggcggctcgattgttattgaccagacagaa
gcattagtcgccatcgacgttaacagtggaaactatcgcgcagatgacaatgcggaaaaa
accgcgttcaaagtcaatatgaaagcggctgaagaaatcagtcgacaaatcagattgcgt
gacctcggtggtgtgatcgtaatcgatttcatcgatatgcgggaagaaaaacatcgacgt
tccgtggaacgcagattaagagaactcgtcaaacgtgatcgtgcccgcaccaaagtatta
cgcatcagtccctttggcctgatcgagatgacacgccagcgaattcgcccttctctgcgg
cgcagcatgtatgaggactgtccttcctgtcgcggaaccggccaggtcaaaaccgccgag
agcatggctatcgaagtcatgcgaaccctgatgaccactgtgaataagaaaaacatttca
cggctcgtactgaatgtacacgaaaatgtcgccaactatctcaacaacaagcggcggaaa
gacatcacccaactggaagaaaccgctcagacttcaataataattaacgctcgtacagat
gtagagccagaacatttaatgacccgatgttatgacgatattggaaatgaagtaaatttc
tag
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