Gimesia algae: Pan161_48070
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Entry
Pan161_48070 CDS
T09989
Symbol
sigA_3
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
gax
Gimesia algae
Pathway
gax02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gax00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Pan161_48070 (sigA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gax03021
]
Pan161_48070 (sigA_3)
Transcription machinery [BR:
gax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pan161_48070 (sigA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
QDT93132
UniProt:
A0A517VJE9
LinkDB
All DBs
Position
complement(6225260..6227026)
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AA seq
588 aa
AA seq
DB search
MHRFDANLNSLFQEAEKQGFLTFQQVHTFLPDEGGDPALIEYIVVGLEERGLDLIDDPNA
DIDDEEVATVDKSTNTHSDVAQGSDEDSDDASSSIVEPETSLSSRDPIRMYLSQMGNIPL
LSRSREIFLAKKIEITRKRFRRTVLESDFALKIAIDTLEKVFAGELPFERTLRTSDTEDA
TKDQIMGRMPFNITTLKALLQKNFDDFELVQSGELGKVEQREVQKRMMIRRQKMATLCEE
LCLRTQRLQPVLKRIHQIAGRMREVQEQLDDYKQLRHKATDHRLLERELSELTIMVVETS
EDFQTRSREIKRRFDDWTEAKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRG
VEKYEYRRGYKFSTYATWWIRQAITRAVADHARTIRIPVHMFQSISTLKARSEQIRQETG
REPTMEELADSVGLGVEETERIMKTWKHPISLDTPVGESEDSSFGDFLEDGHESSPADAA
MREMLKDKIEHVLKSLTYREREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKAL
RKLQHQTRSAHLRGFVDAIFPNKEDEENEGEEGVQSDQESSTMVGALE
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
gtgcaccgtttcgatgcaaatctgaactcactatttcaggaagcggaaaaacaaggtttt
ttaacatttcaacaggttcatacgttcctcccagacgaaggaggcgatcccgcgctgatt
gaatatattgtcgtgggactggaagagcggggccttgatctcattgatgatccgaatgcg
gatattgatgatgaggaagtagccaccgtcgataaatcaaccaacacccattcagatgtg
gcacaagggagcgatgaagattcagatgatgcttcttcttccattgtggaaccggaaacc
tcactctcatcacgtgatcccattcgcatgtatctgagccagatgggtaatattccacta
ttgagtcgctcgcgcgaaatctttctggccaagaaaattgaaatcactcgtaagcgattt
cggcgcactgttctggagtctgatttcgcactcaagattgccatcgacactctggaaaaa
gtgtttgctggcgagcttccttttgagcggaccttacggacctctgatacggaagatgcg
accaaagaccagattatgggacggatgccttttaacatcacgaccttaaaggcgctcctc
cagaaaaactttgatgattttgaactcgttcagtcaggtgaactcggtaaagttgaacag
cgtgaagttcaaaaacggatgatgattcgtcgtcagaaaatggcaaccctctgtgaagaa
ctctgtctgcgtacgcaacgtctgcaacccgtactgaagcgtattcatcagatcgccggt
cggatgcgggaagttcaggaacagcttgatgattataagcaactgcgtcacaaggccacc
gatcaccgcctgctggaacgcgagttgtctgagttgaccatcatggtggttgaaacttct
gaagactttcagacacgttcacgagaaatcaaacgtcgttttgatgactggaccgaagcc
aagcagcagctttctggcggaaacctgcggctggtcgtctcgattgctaaaaaatacaga
aatcgtggcttaagctttctggacctgattcaggaaggaaatgccggcctgatgcgtggt
gtggaaaaatatgaatatcgccgcggttataagttttcgacttatgctacctggtggatt
cgtcaggccattacccgcgctgtcgccgaccatgcccgcaccatccgtattcccgtgcac
atgttccagagcatttccactctgaaagcacgcagcgaacagattcgtcaggaaaccggt
cgtgaacccaccatggaagaactggcagattctgtcggtctgggtgtggaagagaccgaa
cggatcatgaagacctggaaacatcccatcagcctggatacgccggttggcgaaagtgaa
gacagcagcttcggtgatttcctggaagatggacatgaatcctctcccgcagatgcagcg
atgcgtgaaatgctgaaagacaaaattgagcatgttctcaagagcctgacgtatcgcgag
cgtgaaattatccgtctgcgatatggcttaggtgatggctacagttatacattggaagaa
actggtcgtatcttcaaagtaacccgcgagcgaattcgtcagattgaatccaaggctttg
cgaaaattacagcaccagacccgcagtgcacacctgcgaggtttcgtcgatgctatcttc
ccgaataaggaagatgaggaaaacgaaggtgaagagggcgtgcagtcagatcaggagtct
tccaccatggtgggggcgctggagtag
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