Gimesia algae: Pan161_55400
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Entry
Pan161_55400 CDS
T09989
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gax
Gimesia algae
Brite
KEGG Orthology (KO) [BR:
gax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gax03019
]
Pan161_55400 (hrpB)
Enzymes [BR:
gax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pan161_55400 (hrpB)
Messenger RNA biogenesis [BR:
gax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pan161_55400 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
ABC_tran
FtsK_SpoIIIE
RsgA_GTPase
AAA_25
T2SSE
SLFN-g3_helicase
AAA_29
Motif
Other DBs
NCBI-ProteinID:
QDT93853
UniProt:
A0A517VLF4
LinkDB
All DBs
Position
7117611..7121627
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AA seq
1338 aa
AA seq
DB search
MSRGDVNSAAADAGAASEAATAALSELPALIARAMAGDQFRLSQRLRSIKQAQKSKKPFD
KNLQRLREELEKSLARREERRKLCPKITFDQSLPIHEELESIQKTIEENQVVIVCGETGS
GKSTQLPKLLLSMGRGISGIIGHTQPRRIAARSVAARISEELGREQGTACGFKIRFTDTT
NPNTYIKLMTDGIMLAETQTDSFLNQYDTIIIDEAHERSLNIDFLLGFLKRLLPKRRDLR
VIITSATIDAERFSEHFASRQGPAPILNVSGRTYPVEIRYRPFDDEPAGKETGKETGKSH
HNSSQNNSRDEQSQLADAVNELAAIDDGDILIFVATEWDIRETAKLLRGRSIIGDDGGRQ
TEIVPLYGRLSTAEQNKVFRPSSYRRIVIATNVAESSITVPGIRYVIDTGLARISRYSSR
SQVQRLPIEAVSQASANQRAGRCGRVAPGICIRLYSEADYNGRDEFTSPEILRTNLASVI
LQTLNMRLGAIEEFPFLDPPKPTAIRDGYSTLYELGAIDEQNRLTDIGRKISRLPVDPRI
ARMILAAHDENCLHEILIIAAALELQDPRERPIEKQQAADEAHEQFRDPDSDFLSFLKLW
DFYHKLKEEQSHSRLRRACVQNFLSYNRLREWADIFRQLRQLVEESGIKPHPRKDDSAAI
HRALLPGLLSNIAMRSDTHEYTGAGQQKYFLWPGSGIFEKKPKWIISAELIETSKRYART
VAKISPNWIEPAAPHLVKKSWSDPRWNGEAGSAVATEKVTLFGLTIVPRRPVHYGKIDPE
HSRTLLLQYGLVEGDININVDFLAHNQKFIEDLEQQQARSRRYDLIPSQEQQFAYYDQRI
PEDVYDGVSLKKWWKVASRKTPTLLNMRLEDFFDTQSEEIDEGEFPDAINMGKMQFPLEY
HLEPGAEEDGVTVSIPQESLNQLSPQRLGWLVPGLLEEKVAAMIKALPKAVRRMLVPAPE
TAKQVVSKLEFGKGSFEETVAEMLSQISGERITADQFEIQRLPQHLQMNIRVLDQGGDAI
AVNRNLTQLRQEYGSKAASSFTALSDDHWSQSGLTDWTFGDFPAEVQIQHDQLSLTGFPS
LVDEQTTVALCLRDTPERAAYETRFGLRRLFVLSEHKRLKAQIEHLPDLNRISLYATAIG
GINLREQLVELLAERTLFGRKEQLPRNEAQYRQLVKEWRNQIPVAAQDLASLLPGLFEQY
HKMKVTLDKTKVPAWSEPLHDMRAQLNAMINARFLVSTPYPWLQQFPRYLQGMEMRLSKL
GGTGLKKDITNIRSISRYFELYSQRAKQHHEREIVDPQLIKFRWMLEELRVSLFAQKLGT
ALKVSPKILDQQWAAVRD
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcggtgatgtgaattcggctgctgctgacgctggtgctgccagtgaggcggct
actgctgcgctgtcggaactgccggctttgatcgcgcgtgcgatggccggggaccagttt
cggctgtcacaacgactgcggtcgattaagcaggcacagaaaagtaaaaagccgttcgat
aagaatctgcagcggctgcgggaggaactggagaagtcgctggcccgccgcgaagaacgg
cgcaaactctgccccaaaatcacctttgaccagagtctgccgatccatgaggaactggag
tcgatccagaaaacgattgaagagaatcaggtggtgatcgtctgcggggagaccggatcg
gggaaatcgacgcagctgcctaagctgttactgtcgatgggacgcgggatcagcggcatc
atcgggcatacacagccccgccgcatcgcggcccgctcggtcgccgcccgtatctcagag
gaactgggccgtgaacagggaaccgcgtgtggcttcaaaattcgcttcaccgatacgacg
aacccgaacacctatatcaaactgatgaccgacggcatcatgctggcggaaacccagact
gacagtttcctcaatcagtacgacacgatcatcatcgacgaagcccacgaacgctcgttg
aacattgacttcctgcttggcttcctcaaacgcctgctgccgaaacgcagagacctgcgg
gtgatcatcacctcggcgacgattgacgcggaacgcttcagcgaacattttgccagccgc
cagggacccgcgccgattctgaatgtctcggggcgcacgtatccggtcgagatccgctat
cgtccctttgatgacgaaccggctggtaaagagacgggcaaagaaactggcaagtcccat
cataattcatcccagaacaattcacgcgacgaacagtcgcaactggcggatgcggtcaac
gaactggcggccattgatgacggcgacatcctgatttttgtcgcaaccgaatgggatatt
cgtgagacggccaaactgttgcggggtcgatcgatcatcggtgatgacggcggacgacag
actgagattgtgcccctctacgggcgactgtcgacggcagaacagaacaaggtctttcgc
ccttcctcgtatcggcggattgtgattgcgaccaacgtggcggaatcgtcgatcacggtg
cccggcatccgctacgtgattgatacggggctggcacgcatcagccgttattccagtcga
tcacaggtccagcgactgccgatcgaagcggtctcgcaggcgtccgccaatcagcgagcc
ggtcgctgcggtcgtgtcgcaccggggatctgtatccgactctacagcgaagccgattac
aacggtcgggatgaattcacatcaccggaaattctgcggaccaacctggcgtcggtcatt
ttgcagacgctgaatatgcggctgggggcaattgaagagttcccgtttctcgatcccccg
aagcccacggcaatccgcgatggctacagcacactgtatgaactgggagcgattgacgaa
cagaatcggctgacggacattggtcgcaaaatcagtcgcctgccggtcgacccgcggatc
gcacgcatgattctggccgcacacgacgaaaactgtctgcacgaaattctgatcatcgcc
gcggcactcgaactgcaggacccgcgggaacggccgattgaaaaacagcaggccgccgac
gaagcccacgagcagtttcgcgaccccgattcggatttcctcagctttctcaaactgtgg
gacttctatcacaagctgaaagaagagcagtcacacagccgcttgcgacgcgcgtgtgtg
cagaattttctgtcatacaatcggctgcgagagtgggcagacatctttcgtcaactcaga
caactggtggaagagagcgggatcaaaccgcatccgcggaaagacgattcggcggccatt
caccgggcgctgctgccgggcctgttgtcgaacatcgccatgcgttcggatacacacgaa
tacacgggggcgggacagcagaagtattttctctggccgggctcggggatttttgagaag
aagcccaagtggatcatttccgccgagctgatcgaaacgagtaaacgctacgcgcggacc
gtcgcgaagatttcgccgaactggattgagccggcggcaccgcacctggtgaagaagagc
tggagcgatccccgctggaacggcgaagcgggctcggcggtggcgacagaaaaagtgaca
ctgttcggcctgaccatcgtaccccgccgccccgtgcattatgggaaaatcgatccggaa
cattcgcggactctgctgctgcagtacggactcgtcgaaggggacattaatatcaacgtc
gactttctggcacacaatcaaaaattcatcgaagatctggaacagcagcaggcccgctcg
cggcgttacgatttgattccttctcaggaacagcagttcgcctactatgaccagcggatt
ccggaagacgtgtatgatggtgtgagtctgaagaagtggtggaaggtcgccagccgcaaa
acgccgacgctgttgaatatgcgactggaagatttcttcgatacgcagtcggaagagatc
gacgaaggcgaattcccggacgcgatcaacatgggcaagatgcagttcccactggaatat
catctggagccgggtgccgaagaagacggcgtcaccgtttcgattccgcaggagagtttg
aatcaactgtcgccacaacgcctgggctggctggtgccgggactgctggaagaaaaagtg
gccgcgatgatcaaggcgctgcccaaagcggttcgccggatgctggtgccggcacctgag
acggcaaaacaggttgtcagtaagctggagttcggcaagggttcgtttgaagagacggtg
gctgagatgctgtcacagatttcaggcgaacgaattaccgccgaccagtttgagatccag
cgcctgccacagcatctgcagatgaatattcgcgtgctggaccagggaggcgacgcgatc
gccgtcaatcggaatttgactcaactgcgtcaggagtacggttcgaaagccgccagcagt
ttcacggcactttcggatgatcactggagccagtctggcttgacggactggacgttcggt
gattttccggcagaagtgcaaattcagcacgatcaactttcgctcaccggttttcccagt
ttagtggatgaacagacgacagtagccctctgcctgcgggatacgccggagcgggccgcc
tacgaaacgcggtttggattgcggcggttatttgtcttgtcggaacacaaacgactgaaa
gcccagatcgaacacttacccgatctgaaccggatctcattgtacgcgaccgcgatcggc
gggatcaatttgcgggaacaactggtcgaactgctggcagaacggaccctgtttggcagg
aaagaacaactgccgcggaacgaggctcagtatcgtcaacttgtgaaggagtggcggaac
cagattccggttgcagcgcaggacctggcgagtctgctgccgggactgtttgagcagtat
cataagatgaaggtgaccctcgataagacgaaggtgcctgcctggagtgagcctttgcat
gacatgcgggcgcagctgaatgcgatgatcaacgcccggttcctggtaagtacgccttac
ccgtggctgcagcagtttccgcgttatctgcagggcatggagatgcgattgagcaagctg
gggggaaccggtctgaagaaagacattacgaacatccgcagtatttcacgctacttcgaa
ttgtattcacagcgggcaaagcagcatcacgagcgggagattgtggatccgcagttgatc
aaattccgctggatgctggaggaattacgcgtgtcgctgtttgcccagaagctgggcacg
gctttgaaagtctcgccgaaaattctggatcagcagtgggcggcggtgcgggactga
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