Gimesia alba: Pan241w_14550
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Entry
Pan241w_14550 CDS
T09945
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gaz
Gimesia alba
Brite
KEGG Orthology (KO) [BR:
gaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gaz03016
]
Pan241w_14550 (rtcB)
Enzymes [BR:
gaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pan241w_14550 (rtcB)
Transfer RNA biogenesis [BR:
gaz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pan241w_14550 (rtcB)
Prokaryotic type
tRNA splicing ligases
Pan241w_14550 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDT41395
UniProt:
A0A517RC07
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All DBs
Position
1779953..1781374
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AA seq
473 aa
AA seq
DB search
MNSRQLLKIGVPEYCLKTAKTAIQNKVAEEKVNGKGSGAGKVRGKALKELVQAVVAQPEA
FLEDLSFRQLALELIEDNREEVFEPIDYQVWGKEGIDEGAFSQMDLACHVPSARGAALMP
DAHLGYGLPIGGVLALEDAVIPYAVGVDIACRMKLSVLDISVDALDQKPHQFVDALNRGT
VFGVGAAHEKRQYHGVMDQDWTVSKVTREKKDRAWKQLGSSGSGNHFVEFGVLTFTEADA
ELGLEAGEYVALLSHSGSRGAGAAVCSTYSSIAQARLHKRHHKLGRLAWLEMDSEAGQEY
WAAMNLMGEYAAANHAVIHQNVSEILGSKVVSGVENHHNFAWKEEHDGKEFYVHRKGATP
AAAGELGVIPGSMADPAFVVRGKGNPASLNSASHGAGRCMSRNKAKDKYRWKAVRNDLAK
RGITVISAGADEVPGVYKNIMEVMAEQQDLVDIVARFNPKVVKMCGDGSRAED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaactctcgacagttgctgaaaatcggtgttccagaatattgtttgaagactgcgaaa
acagcgattcagaacaaagttgccgaagagaaagtaaacggtaaaggatccggtgcaggg
aaggtacgtggtaaagcgttgaaagaactggttcaggctgtggttgcacagccggaagcg
tttctggaagacctgtcctttcggcagttggctctggagctgattgaagataatcgtgaa
gaagtgttcgaaccgatcgactaccaggtttggggtaaagaggggatcgatgaaggtgcg
ttctctcagatggatctggcgtgccatgttccatctgcgcggggtgctgcattgatgcct
gatgcgcacctgggttatggtctgccgatcggcggtgttttggcattggaagatgccgta
attccgtacgcggttggtgtggacattgcgtgccgcatgaaattgtcggtgctggatatt
tctgttgatgcgctggatcagaagccgcatcagttcgtggatgcgctgaatcggggaacc
gtattcggtgtgggtgcggcacatgaaaagcgacagtatcacggtgtgatggatcaggac
tggaccgtttccaaagtgacacgcgagaagaaggaccgcgcctggaagcagctggggtct
tcgggttcgggtaaccactttgtcgaatttggcgtattgacgttcacggaagccgacgcc
gaactgggtttagaagcgggcgaatacgtggcgctattgagccatagtggaagccggggc
gctggtgccgcggtgtgcagtacatattcttcaatcgcacaggcgcgattgcataaacgt
catcataaactgggccgactggcctggctggaaatggattcggaagcgggccaggaatac
tgggcggcgatgaatttaatgggcgagtatgcggctgcgaaccatgcggtgattcatcag
aatgtttcggaaattctgggtagtaaggtggtttccggtgtggaaaatcatcataacttt
gcctggaaggaagagcatgatggtaaggaattttacgtgcatcgcaagggggcgactccc
gctgcggccggcgaactgggtgtgattcccggttcaatggcggatccggcatttgtggtg
cgtggaaaaggaaatccagcgagtttgaattcggcatcacatggtgcggggcgttgtatg
tctcgtaacaaagcgaaggataaatatcgctggaaagcagttcgcaatgatctggcaaaa
cgcgggatcaccgtgatttccgccggcgcggatgaagtgccgggcgtgtataaaaacatc
atggaagtcatggcagaacagcaggacctggtggatattgtcgcccgattcaatccgaaa
gtggtgaaaatgtgcggcgacggaagccgtgcagaggattga
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