Gimesia alba: Pan241w_23820
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Entry
Pan241w_23820 CDS
T09945
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
gaz
Gimesia alba
Pathway
gaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan241w_23820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaz03021
]
Pan241w_23820
03019 Messenger RNA biogenesis [BR:
gaz03019
]
Pan241w_23820
Transcription machinery [BR:
gaz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Pan241w_23820
Messenger RNA biogenesis [BR:
gaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pan241w_23820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Spore_III_AA
S1CSD-TOTE-2
AAA_25
CFAP298
AAA_22
Lin-8
Motif
Other DBs
NCBI-ProteinID:
QDT42299
UniProt:
A0A517REK2
LinkDB
All DBs
Position
complement(3021460..3023076)
Genome browser
AA seq
538 aa
AA seq
DB search
MAAKSSETSDKPKPTRRRTTKPRKKVAPPTEDTFEKSESDALQDEYHRKAEENLELFENS
HSSQSEAEPEREPVSMSDNPAESVGENNSEQTDGDRSEKTGGNRRRRRRRRKSDGSNNAQ
GQNQGRQGGGGNRGRSNNRGGGGRSRSGSGGRTQARRPRSASTAANENISGTIEGVLELH
PKAYGFIRDPKSNYKAQDSDAFVSSSLIEKHNLREGILIRGEVGPGTRGQGPRLKSIETI
DGRTVEEYMEIKSFDELTPINPFEQIKLETGPMPITMRIMDLLTPIGKGQRALVVAPPRT
GKTMLLQDIAEAVSKNHPEVRLMVLLIDERPEEVTEMERSIKGEVISSSMDRDVESHVRT
SQLIFERGKRLAEAGEDAFILLDSITRTARAFNKWVGNTGRTMSGGLDVKAMDIPKKMFG
TARRFDEGGSLTVLGTALIDTGSRMDEVIFQEFKGTGNMEMVLSRELSDRRIFPAIDITL
SGTRREEKILDPEVLEGVTMLRRSLISLSPVEAMEQLSSTLKKFPTNKEFLEKIRAIL
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaaaagttctgaaacttctgacaaacccaaacccacacgtcgaagaacaacc
aaacctcgaaaaaaagtggcccccccaacagaagatacttttgaaaaaagcgaatcagat
gcgctgcaagacgaataccaccgtaaagcagaagaaaatctcgaactattcgaaaactct
cattcatctcagagtgaagcagaacctgaaagagaacctgtaagtatgtcagataatcct
gctgaatccgtaggcgaaaataactcagaacaaactgatggcgaccgatctgaaaaaaca
ggtggcaatcgacgcagaagacgtcgcagaagaaaatctgacggctctaataatgcacaa
ggacaaaaccagggacgccagggtggcggcggaaatcgaggccgctcaaataacagaggt
ggaggcggccgttctcgttctggttctggtggacgcacacaagcccgacggccgcgttcg
gcttcaaccgcagccaatgaaaatatctccggaaccattgaaggcgtcttggaacttcac
cccaaagcatacggctttattcgagatcccaaatccaattacaaagcacaggactcagac
gcgtttgtttccagctccctgatcgaaaaacacaatctccgcgaaggtattttaattcga
ggagaagtcggccccggaaccagaggacagggaccacgactcaagagcattgaaaccatt
gatggtcgtaccgtcgaagaatacatggaaattaaatccttcgacgaactgactcccatc
aatcccttcgaacagatcaaactcgaaacaggtcccatgcccatcacaatgcgcatcatg
gatctgctcactccgatcgggaaagggcaaagagcacttgttgtcgcgcctcctcgaacc
ggaaaaaccatgctcttacaggatattgcggaagcagtcagtaagaaccatcccgaagtt
cgcctgatggtgttgttgatcgatgaacgccccgaagaagtcacggaaatggaacgctca
atcaaaggcgaagtcatctcctcatcaatggaccgggacgtcgaaagtcatgttcgcacc
agccagctcatttttgaacgtggcaaacgtctggccgaagcgggagaagatgccttcatc
ctcttggacagtatcacgcgaaccgcacgtgccttcaataaatgggttggcaacaccgga
cgcaccatgagtggcggtctggatgtcaaagcgatggatattcccaaaaagatgtttgga
accgcgcgtcgctttgatgaagggggctccctgaccgtactgggaacagcactgattgac
actggcagccgcatggacgaagtcattttccaggaattcaaagggaccggtaatatggaa
atggttctcagtcgggaactatccgaccgacgcatctttcctgcgattgatatcacgctt
tccggaacccgtcgtgaagaaaagattctggatcccgaagttctcgaaggtgtcactatg
ctccgcagaagtctgatttcgctcagccctgttgaagcaatggaacaactcagcagtaca
ctcaagaaatttccaacgaacaaagaatttctggaaaaaatccgggcgattctttag
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