Gimesia alba: Pan241w_24640
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Entry
Pan241w_24640 CDS
T09945
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gaz
Gimesia alba
Pathway
gaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan241w_24640 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaz03019
]
Pan241w_24640 (cshA)
03009 Ribosome biogenesis [BR:
gaz03009
]
Pan241w_24640 (cshA)
Enzymes [BR:
gaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pan241w_24640 (cshA)
Messenger RNA biogenesis [BR:
gaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pan241w_24640 (cshA)
Ribosome biogenesis [BR:
gaz03009
]
Prokaryotic type
rRNA helicases
Pan241w_24640 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QDT42380
UniProt:
A0A517REU9
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All DBs
Position
complement(3137690..3138943)
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AA seq
417 aa
AA seq
DB search
MTQKTKKKKKTTKTKFDQLGLNDKILKNLSKAGYEKPSPIQAELIPIAVTGQDCIGQART
GTGKTAAFSLPVLQQIDLRRPGMQALILAPTRELSEQVAAEIRKLCPSKSLSLAVLVGGK
PVRPQENQLKKGAQIAVGTPGRVIDHINRGNLKLGQLGFVVLDEADRMLDIGFRPDIEKI
LRKCPKERQTLLLSATLPPPVERLAQRYMQEPVMIDLSDNKVSVDAIDQYYITVDPDRKI
KLLSRLLFQERPKQTIVFTRTKRGADKLDRIFSKKLKDVAAIHGDLPQTKRDRVLKKFRE
GKIRLLIATDVMGRGIDVSGISHIINFDIPEFSDDYVHRIGRVGRLSSDQKGAAFTFVAP
DEGDQLTNIENRINHMISEFRVDNFEAYKPQKPRKKIEKVSHLGSTEHLINPEFGDF
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgactcagaaaacgaaaaagaaaaagaagacaaccaaaaccaaatttgatcagttagga
ctgaatgacaaaatcttaaaaaatctcagcaaagcagggtatgaaaaacccagccccatt
caggctgaactgattccgattgccgttaccggacaggattgtatcggacaggctcgaacc
ggaaccggcaagacagccgccttctcgttgcccgtattgcaacaaattgacctcagacgt
ccaggcatgcaagccttgatcctggctcccacccgggaattgagtgagcaggtcgcagca
gaaattcgtaagctgtgcccttcgaaatcactgagtctcgcggtattagtgggtggcaaa
ccagttcgtccccaggaaaatcaattgaaaaaaggagcccagatcgccgtcgggacgccg
ggccgcgtgattgatcatatcaatcgcggaaatctcaaactgggccaacttggtttcgtc
gtcttagatgaagcagaccgcatgctggatatcggctttcgtcccgatatcgaaaagatt
ctgcggaagtgcccgaaagaacgacagactttactgctatcggcaaccctgccacctccg
gtcgagcgtctggctcaacgctacatgcaagagccggtcatgatcgatctgtctgataac
aaagttagcgtcgacgccatcgatcagtattacatcactgtggatccggatcgaaaaatc
aaactcctctcgcgactcctgtttcaggaacgccccaaacaaacgatcgttttcacccgc
accaaacggggtgccgataaactcgatcggatcttttccaagaaactcaaagacgtcgcc
gccatccacggagacttaccacaaacgaaacgggaccgtgttcttaaaaaattccgtgaa
ggaaaaattcgcctgttgattgccacagacgtcatgggacgcggcatcgacgtcagcggc
atctcccacattatcaattttgatatccctgaattcagtgacgattatgtgcaccggatc
gggcgtgtgggccggttgtcttccgatcagaaaggcgccgctttcacgtttgtggcacct
gatgagggagaccagttgaccaacatcgaaaatcggatcaatcacatgatttccgaattt
cgggtagataactttgaagcgtacaaacctcagaagccccgcaagaaaatcgagaaggtt
tcacacctcggctcgaccgagcacttaatcaatcccgagttcggcgatttttaa
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