Gimesia alba: Pan241w_40080
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Entry
Pan241w_40080 CDS
T09945
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gaz
Gimesia alba
Pathway
gaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan241w_40080 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaz03019
]
Pan241w_40080 (deaD)
03009 Ribosome biogenesis [BR:
gaz03009
]
Pan241w_40080 (deaD)
Enzymes [BR:
gaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pan241w_40080 (deaD)
Messenger RNA biogenesis [BR:
gaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pan241w_40080 (deaD)
Ribosome biogenesis [BR:
gaz03009
]
Prokaryotic type
rRNA helicases
Pan241w_40080 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QDT43904
UniProt:
A0A517RJ50
LinkDB
All DBs
Position
5128548..5130308
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AA seq
586 aa
AA seq
DB search
MSTDAPSQAKFTDLALCQPVLDSLEELGYQTPTPIQAQTIPYLLEGRDLVGQAQTGTGKT
AAFALPLLSKIDLDVKAPQVLVLAPTRELAIQVSESFKQYGSKLKGLQVLPIYGGADFKS
QLQPLKRGVHVVVGTPGRVMDHMRRGTLKMDNLRCLVLDEADEMLRMGFIDDVEWILEQT
PDNHQTTLFSATMPEAIRRIAVTYLQSPEEITVKVKTRTADTINQRYWLAKGHHKLDALT
RILEAEEIDGVLIFVRTKTITTELSEKLESRGFLAAPLNGDIPQKQRERTVGRLKAGHVN
IVIATDVAARGLDVNRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAITFVSPRETRSL
QSIERAIKHKIERMDLPAISKINERRQERFKESITKAMKGPDFELFQKLLAEHQAESGSS
ELQIAAALACMYQGKRPLFLTEAPPRKQRETSSGPGRDHSRSERPERRFQKDKERPRNRK
LEDAPEEGMERFRIQVGHSHGVKPGNIVGAIANEAELDSQYIGRINIFDDYSTVDLPEGM
PRDIFQSLKTVWVSGQQLRISRFEQAGASAKRKRFKGKHKHKQQKV
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacggatgccccatcacaggcaaaatttacggatttagcactctgtcagcccgtt
ctggactcgctggaagagctgggataccagaccccgactccgattcaggcacagacgatt
ccctacttactggaaggacgtgatctcgttggtcaggcccagactggtacagggaaaacc
gctgcttttgcactccctttactctcgaaaatcgatctggatgtcaaagcaccacaggta
ttagtgctcgcccccacgcgggaactggcaattcaggtctccgaatcatttaagcaatat
ggctcgaaactgaaaggcctgcaggtccttccgatctacggcggcgctgacttcaaaagc
cagttacagcctttaaaacgaggggtccacgtcgtagtgggaacccccggccgtgtaatg
gaccatatgcgtcgcggcacactcaaaatggacaacttgcgttgtctcgtgctggatgaa
gccgacgaaatgctacgaatgggctttattgatgatgtggaatggatactggaacagaca
ccggataatcatcaaaccacactgttttcggcgaccatgcccgaagccatccggcggatt
gcagtgacctatctgcaatcgccagaagaaatcaccgtcaaagtcaaaaccagaaccgct
gataccattaatcaacggtactggctggcgaaaggccatcataagctggatgctttgacc
cgcattctggaagcggaagaaattgacggcgtactcatctttgtacgaaccaaaacaatt
accacggaattgtctgaaaaactggagtcgcgcggattcctcgctgctcctttaaatggc
gatatcccccagaaacaacgagagcgaactgtaggtcggctcaaagccgggcatgtgaat
attgtcatcgcaaccgatgttgcagcccgtgggttagacgtgaatcgcatcagccacgtg
atcaattacgatttaccaggcgactcagaagcttatgtgcatcgtatcggtcgtacgggt
cgtgcaggtcgcacgggtgaagcaatcaccttcgtttctcctcgtgaaacacgatcactg
cagagcatcgaacgtgccatcaagcataaaattgaacgcatggatctgccagcgatcagc
aaaatcaatgaacgccgccaagagcgtttcaaagaatcgatcacgaaagccatgaaaggg
cccgatttcgaactgttccaaaaactgctggccgaacatcaggccgaatcaggcagctcg
gaacttcaaatcgcagccgcgttggcttgcatgtatcagggaaaacgtcctctgttctta
accgaggctcctcctcgaaaacaacgggaaacatcatctgggccaggaagagaccattct
cgctccgagcgtcccgaacgtcgtttccagaaagacaaagaacgtccccgcaaccgaaag
ctcgaagatgcccctgaagaaggcatggaacgttttcgcattcaggtcggtcacagtcat
ggagtcaaaccgggcaatattgtcggtgcgattgccaatgaggctgaactggacagccaa
tatatcggccggatcaatatctttgacgactacagtacggttgatctgccggaaggcatg
cctcgggatatcttccaatctttgaaaaccgtctgggtctctggccagcagttacgaatt
tcacgattcgaacaggcaggcgcctcagccaaacgaaaacgctttaaaggcaagcataag
cacaaacaacagaaggtttaa
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