Gimesia alba: Pan241w_55940
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Entry
Pan241w_55940 CDS
T09945
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gaz
Gimesia alba
Pathway
gaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pan241w_55940 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaz03021
]
Pan241w_55940 (rpoC)
03400 DNA repair and recombination proteins [BR:
gaz03400
]
Pan241w_55940 (rpoC)
Enzymes [BR:
gaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pan241w_55940 (rpoC)
Transcription machinery [BR:
gaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pan241w_55940 (rpoC)
DNA repair and recombination proteins [BR:
gaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pan241w_55940 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QDT45474
UniProt:
A0A517RNP8
LinkDB
All DBs
Position
complement(7158593..7162954)
Genome browser
AA seq
1453 aa
AA seq
DB search
MSVAQTAYERINDYGSVKIGLASPHDIRSWSFGEVKKPETINYRTYRPERDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPIVHIWFFKSMPSR
LGALLNMKTTALEKVVYFQDYVVTDPGDTPLEMCQTMTEEEARQNQAKYGPGSFEIEMGA
EAIKKLLMSLNLVEISERLRKELFETASQQKRKDYIKRLKIVESLRDSDNRPEWMVLEVI
PVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIVRNEKRMLQQS
VDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPELN
LHQCGLPKKIALELFQPFIIRRLKDSGHADTIKSAKRMLERKDEDVWDILDEVIQNHPVL
LNRAPTLHRMGIQAFEPILVEGNAIRVHPLVCGGFNADFDGDQMAVHLPLSIEAQVEATT
LMLATNNIFSPSDGAPIIRPSQDIVMGCYYLTLKKTERMGEGMIFSGVNEVHAAFQQRKL
DRHAIIKVRMPSDKRIKGDGADDFKMGGLVETTVGRVIFNDILPKKMAFYNLTMKGRDLS
NVISDCYLELGRRETINLLDKMKETGFRESTASGLSFATSDLKTAPNKAKVIGDSEKTVL
QKSKLYERGLITSEERYNEVLDTWTKARELITTSMMHELENDYRDEGKYVNPIYLMSNSG
ARGGIEQMRQLGGMRGLMAKPSGEIIETPIKANFREGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADICQNVVVTEHDCGTAQGMTRGVVYRGEKVEMSLTDAIRGRVSRTNIV
DPITDEVIVRENELITVEIARRIEAMGLEKIQVRSPMTCESSLGICRLCYGMDLSTGSLV
EEGLAVGIIAAQSVGEPGTQLTMRTFHIGGTASHEVEEHEIKTRRAGKATFARIRSVVNN
EGLSVVLTRNGEVVINDPKGRELERYTIPNGATLMVNEGDELAEGQVICQWDPHSISILA
EVGGRVRFEECVEGKTIRTDKDPSGHIRRSIIEHKGELHPQIIIEDGTGKILDFYYLPEK
ASIEVEEGQQITAGTVVAKNPRESAGTQDITGGLPRVTELFEARRPKDPSVLAEIDGEVE
FVPEKKRGKRIVIVRGEDGTEVEHVIPHGKHLLVHAGDLVKAGDALVRGPLVPHDILRVS
GTEAVQQYLLHEIQSVYRAQRVTIDDKHLEIIISRMLSKVMVEDVGDTNLLPGIVLDKLT
FQRINEETIACVKVVDSGDTDFQPDDLVPLATIEEVNAQVELAGQAPASFTKPKPASASS
QLLGITKASVQSESFISAASFQETTKVLTEAALAGRVDYLVGLKENVILGHLVPAGTGFY
QHQTAEVRIRPEALEELKAEKERILAARMSLLNEVQPDKPVPLGGGQETEEYGQGGADPS
MENAPPSPNPFDE
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgttgcacaaacagcttacgagcgaattaacgattacggttccgtaaaaattgga
ttggccagtccacacgatattcggagttggtcattcggcgaagtgaagaaaccggaaacg
attaattatcgaacctatcgtcccgaacgtgatggattattctgcgaacgaattttcggt
cctgaaaaggactgggaatgtgcctgtggtaaataccggggtatgaagtataaaggcatg
atctgcgaccgttgtggcgtcaaagtgacacatagtcgtgttcgtagaaagcgtatgggg
cacattgagttggcagcaccaattgtgcatatctggttcttcaaatcgatgcccagccgt
ctgggggcgttgttgaatatgaagaccactgctctggaaaaggtggtttatttccaggac
tacgtcgtgaccgatcccggcgatacgccgctggaaatgtgccagacgatgactgaagag
gaagcacgtcagaatcaggccaagtatggccccggttcgttcgagattgagatgggggcc
gaagccattaaaaagcttctgatgagcctgaatcttgttgagatttcggaacgacttcgc
aaagagttatttgaaaccgccagccagcagaaacgcaaagactacatcaaacgtttgaaa
atcgtagagtcattgcgtgacagtgataaccgtcctgagtggatggtgttggaagtgatt
ccggtaattccacccgacttgcgtccgctggttctgctggattccggtaacttcgcaacc
agcgatttgaacgatctttatcgtagaattatcaatcgtaataaccgtttgaaaaaactg
gttgatttgaacgctcccgaagtgattgtgcgtaacgaaaagcgcatgttacagcagtcg
gtagacgctttgttcgataacaatcgttgtaagcgtcctgtgctgggttcttctaaccgg
cctctgaaatcattgactgatatgattaaagggaagcaaggacgtttccgtgaaaacctg
ctcgggaaacgtgtcgattattctgcacgaagtgtgatcgtggttggtccggaactgaat
ctgcatcagtgtggtctgcccaagaaaattgcactcgagctgtttcagccttttattatt
cgtcgtctgaaggacagcgggcacgctgatacgatcaaatcagcgaagcgcatgttggag
cgtaaagatgaggacgtatgggatattctcgacgaagtgattcagaatcatcccgtgctt
ctgaaccgcgctccgacgttgcaccgtatggggattcaggcatttgagccgattcttgtg
gaaggaaacgcgatccgcgtccatccactggtgtgtggtggatttaacgccgacttcgat
ggtgaccagatggcggttcatttgccgctatcaatcgaagcgcaggtggaagcaacaact
ttgatgctggctacgaataacattttcagtccgtccgatggtgcaccgattattcgtcct
tctcaggatatcgtgatgggttgctattatttgaccttgaagaagacggagcggatgggt
gaaggcatgattttctccggtgtgaacgaagttcatgccgcattccagcaacgcaagctg
gaccgtcatgccatcatcaaagtgcgaatgccttccgataaacggataaaaggtgacggc
gctgatgatttcaagatgggaggcttagttgaaacgacggtaggacgtgtcattttcaat
gatattctgcctaagaagatggccttctataacctgacgatgaaaggtcgcgatctttca
aacgtgatttctgactgttatctggagctcggtcgtcgtgaaacgattaacctcctcgac
aagatgaaggaaaccggatttcgtgaatctacggccagtggtctttctttcgcaaccagc
gatttgaaaacggctcccaataaagccaaggtgattggtgattcggagaaaacagttctg
cagaagtccaagctttatgaacgtggtttgattacatctgaagaacgttataacgaagtg
cttgacacgtggacgaaagctcgcgagttgattacgacctccatgatgcatgagttggaa
aacgactaccgtgacgaaggtaagtatgtgaatccgatttatctgatgtcgaactccggt
gctcgtggtggtatcgaacagatgcgtcagcttggtggtatgcgtgggctgatggccaag
ccgagtggagaaattattgaaactccgattaaggcaaatttccgtgaaggattgaccgta
ctggagtatttcagttcgacacacggtgcccgtaaaggattggccgatacagctctgaaa
accgcagacagtggttacctgacacgtaaactggcagatatctgtcagaacgtcgttgta
acagagcatgactgtggtactgctcagggtatgacacgcggcgttgtttatcgtggtgaa
aaagtggaaatgagtttgactgatgcgattcgtggtcgtgtcagccgaaccaacattgtc
gatccgattaccgacgaagtcatcgttcgcgaaaacgaactgatcaccgtagaaattgca
cgtcgcattgaagcgatggggctggaaaagattcaggtccgcagccccatgacttgtgaa
tcttcactcgggatctgccgcctgtgttacgggatggacctctcaaccggttcgcttgtc
gaagaagggttggcagttgggattatcgccgcacaaagtgtgggtgagcctggtactcag
ttgacgatgcgtacgttccacattggggggactgcttcccacgaagtggaagagcatgaa
attaagacccgccgtgctggtaaagcaacatttgcacggatcaggtctgttgtgaacaat
gaaggtttgagcgttgtattgacgcgaaacggtgaagttgtgatcaacgatcctaaaggt
cgtgaactggaacgttatacgattcccaacggtgcaactctgatggtgaatgagggagat
gagttggcagaaggtcaagtgatctgtcagtgggaccctcactcgatctccatccttgca
gaagtgggtggtcgtgtacgatttgaagagtgtgtggaagggaagaccattcgcaccgac
aaagaccccagtggccacatccgccgttcgattattgagcataagggggagttgcatcca
caaattatcatcgaagatggtacaggcaagattctggacttctattatcttcctgaaaag
gcaagtatcgaagtagaagaaggccagcagatcactgcagggacagttgtcgccaagaac
cctcgggaatctgcgggtacccaggatattaccggtggtttgcctcgtgtgactgagttg
ttcgaagcaagacgaccgaaagatccttccgttctagccgagatcgatggcgaagtcgaa
ttcgttcctgaaaagaaacgtggaaaacgaatcgttatcgttcgcggggaagatggaacc
gaagtcgaacatgtgattccgcatggtaagcaccttctggttcacgctggtgatctggtc
aaagccggtgacgctctggtgcgtggtcctctggtaccgcacgatattttacgtgtcagt
ggtacagaagcagttcaacaatatctgctgcacgaaattcagagcgtgtatcgtgctcag
cgtgtgacaatcgacgataagcatcttgaaatcataatttctcgcatgttgagtaaagta
atggtcgaagatgtgggtgatacaaacctgctaccaggaattgtcctcgataagttgact
ttccaaaggatcaatgaagagacgattgcctgcgtaaaagtggttgattccggtgatacg
gacttccagccagacgacctggtgccactagcaacaattgaagaagtaaatgcccaggtg
gaactggcaggtcaggctcctgccagctttaccaagcctaagccggcatctgccagctct
cagctgttggggattaccaaagcctcagtgcagagtgaaagtttcatctcagcagccagt
ttccaggaaactacaaaggtgttgaccgaagcggcacttgccggtcgtgtcgattatctg
gtggggctgaaagaaaatgtgatcctcggtcacctggttccagcgggaaccgggttctat
cagcaccagactgcagaagttcgtattcgtccagaggctttggaagagctgaaggctgaa
aaagaacgtattctggcagcacggatgagcctgttgaatgaagttcagcctgataaaccc
gttccattgggcggcggtcaggaaaccgaggaatatggacaggggggcgcggatccctca
atggaaaacgctccgccaagccctaatccctttgatgagtaa
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