Gemmatirosa kalamazoonensis: J421_1706
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Entry
J421_1706 CDS
T03025
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gba
Gemmatirosa kalamazoonensis
Pathway
gba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J421_1706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gba03019
]
J421_1706
03009 Ribosome biogenesis [BR:
gba03009
]
J421_1706
Enzymes [BR:
gba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J421_1706
Messenger RNA biogenesis [BR:
gba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J421_1706
Ribosome biogenesis [BR:
gba03009
]
Prokaryotic type
rRNA helicases
J421_1706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHG89243
UniProt:
W0RIM5
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All DBs
Position
1945864..1947705
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AA seq
613 aa
AA seq
DB search
MSAPTSPELLDTVPPDDGGFAALGLRPELLTAVTALGYEEPTPIQRAAIPVLLEGRDVLG
LAATGTGKTAAFALPLLDRVAGARNRDGSPAALVLVPTRELAMQVAEAVHKYGRPLGIQV
VPIYGGAPMGRQLSALERGVDVVVATPGRALDHLGRGTLRLDSVRVVVLDEADEMLDMGF
EDELRAILEATPTERQTALFSATMAPQVARIAGAHLRDPARVEIAREPMAAGTVPRVRQT
AYVVPRAHKLATLGRVLDIEAPTSAIVFCRTRTEVDELTETLAGRGWSAEALHGGMGQEA
RDRVMRRFRGGQLELLVATDVAARGLDVEHVSHVVNYDVPSAPEAYVHRIGRTGRAGREG
AAVTIAEPREHRLLRNIERLTGQKIEFAVVPTVADLRARRLDLTRAAVQDALVEAQTNAA
RLDRFRIVVETLANEFDLMDVAAAAVSVAHEATAGDAEEDDVEIPTVTVGEYRGGSRTAG
RFGRFERNERPRRESWRDEGGREGARESAREGGREGGREGGREGAPPDSNVAPARRASGT
PTTRGGTRERVATAAPATRRASTSAPGGRRGSARRISSARSRTRRGCTRAPSGPSRSPTG
SRSSRSPNRRWRR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcaccgacttcccccgaactcctcgacaccgtaccgcccgacgacggcggcttc
gcggcgctcggcctgcgccccgagctgctcaccgcggtcaccgcgctcggctacgaggag
cccacgcccatccagcgcgcggcgatccccgtgctgctcgaggggcgcgacgtcctcggg
ctcgccgcgaccggcacgggcaagacggccgcgttcgcgctgccgctgctcgaccgcgtc
gcgggcgcgcggaaccgcgacgggtcgccggccgcgctcgtcctcgtgccgacgcgcgag
ctcgcgatgcaggtggcggaagcggtgcacaagtacggccgaccgttaggcatccaggtc
gtgcccatctacggcggcgcgccgatgggacggcagctctccgcgctcgagcgcggcgtc
gacgtcgtcgtcgccacaccggggcgcgcgctcgaccacctcgggcgcggcacgctgcgg
ctcgactcggtgcgcgtcgtggtgctcgacgaggccgacgagatgctcgacatggggttc
gaggacgagctgcgcgcgatcctcgaggcgacgccgaccgagcggcagaccgcgctgttc
tcggccaccatggcgccgcaggtcgcgcgcatcgccggcgcgcatctgcgcgatcccgcg
cgcgtcgagatcgcgcgcgagccgatggccgccggcaccgtgccgcgcgttaggcagacg
gcgtacgtcgtgccgcgcgcgcacaagctcgcgacgctcggccgcgtgctcgacatcgag
gcgccgacgagcgcgatcgtgttctgccgcacgcgcacggaagtcgacgagctcaccgag
acgcttgccggccgcggctggagcgccgaagcgctgcacggcggcatggggcaggaggcg
cgcgatcgcgtcatgcggcgcttccgcggcggccagctcgagctgctcgtcgccaccgac
gtcgccgcgcgcggcctcgacgtcgagcacgtgtcgcacgtcgtgaactacgacgtgccg
agcgcgcccgaggcgtacgtgcaccgcatcggccgcaccgggcgggcgggccgcgagggc
gcggcggtgaccatcgccgagccgcgcgagcatcggctgctgcgcaacatcgagcggctg
accggacagaagatcgagttcgccgtcgtgcccacggtcgccgacctgcgcgcgcgccgc
ctcgatctcacgcgcgcggcggtgcaggacgcgctcgtggaggcacagacgaacgcggcg
cggctcgaccgcttccgcatcgtcgtggagacgctcgcgaacgagttcgatctcatggac
gtcgccgccgcggcggtgagcgtcgcgcacgaggcgaccgccggcgacgccgaggaggac
gacgtcgagatcccgacggtgaccgtgggcgagtaccgcggtggctcgcgcacggcggga
cgcttcggccgcttcgagcggaacgagcgcccgcgccgcgagagctggcgcgacgagggg
ggccgcgaaggcgcgcgcgagagtgcgcgcgagggcgggcgcgagggcggccgcgagggc
ggccgcgagggggccccccccgacagcaacgtcgcgccggcccgtcgagcgagcggtacc
ccgacgacgcggggcgggacgcgcgaacgcgtcgcgaccgcggcaccggcgacacgacgc
gcatctacgtcggcgccgggcggaaggcggggatccgcccggcggatctcgtcggcgcga
tcgcgaacgaggcggggctgcacgcgcgcgccatcggggccatcgagatcgccgaccggt
tctcgctcgtcgaggtccccgaatcggcggtggaggcggtga
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