Gemmatirosa kalamazoonensis: J421_2622
Help
Entry
J421_2622 CDS
T03025
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gba
Gemmatirosa kalamazoonensis
Pathway
gba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J421_2622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gba03021
]
J421_2622
03019 Messenger RNA biogenesis [BR:
gba03019
]
J421_2622
Transcription machinery [BR:
gba03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
J421_2622
Messenger RNA biogenesis [BR:
gba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J421_2622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
ATPase_2
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AHG90159
UniProt:
W0RGD6
LinkDB
All DBs
Position
complement(3048995..3050287)
Genome browser
AA seq
430 aa
AA seq
DB search
MPGDVIPGAESPLVDIVELKRKSLPELHALADELNVSNHSGLRKQELIFRIEQSLLDADV
LLRGDGVLEVLPEGYGFLRSQDWNYLYGPDDIYVSPSQIKRFDLRTGDSVVGQVRPPKEW
EKYLALLKVERVNGDEPEKAKQRIAFDNLKPRYPDERIHLEPKDGDLSMRLCDIIAPLGK
GQRGLIVAPPRAGKTILLQKLANAIVENHPEVSLIILLIDERPEEVTDMQTNVPGAEVIS
STFDEPADRHVQVADMVLEKAKRLVESGKHVVILLDSITRLARAHNTIVPHSGKILSGGV
DAKALEKPKRFFGSARNIDGGGSLTIVATALIETGSRADEVIFEEFKGTGNMELVLDRKI
AERRIFPAIDVHKSGTRREELLFDKDETNRIFLLRNFLGGMNSEDAITFLLTRMSRTKNN
KEFFASMAEG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggtgacgtgattccgggggccgaatcccccctcgtcgatatcgtcgagctgaag
cgcaagtcgctgcccgagctccacgcgctggcagacgagctcaacgtctccaaccactcc
gggcttcggaagcaggagctgatcttccgcatcgagcagagtctcctcgacgcggacgtg
ctgctgcgcggcgacggcgtgctcgaggtccttcccgaaggctacggcttcctccgcagc
caggactggaactacctgtacgggccggacgacatctacgtctcgccgtcgcagatcaag
cgcttcgacctgcgcaccggcgattcggtggtcggccaggtgcgcccgccgaaggagtgg
gagaagtatctcgcgctgctcaaggtcgagcgcgtgaacggcgacgagccggagaaggcg
aagcagcgcatcgcgttcgacaacctcaagccgcgctaccccgacgagcggatccacctg
gagccgaaggacggggatctcagcatgcggctgtgcgacatcatcgcaccgctcggcaag
ggacagcgtgggctcatcgtcgcgccgccgcgcgcgggcaagacgatcctgctgcagaag
ctcgcgaacgcgatcgtcgagaaccaccccgaagtgtcgctgatcatcctcctgatcgac
gagcgcccggaggaggtcaccgacatgcagacgaacgtaccgggcgcggaggtcatcagc
tccacgttcgacgagcccgccgaccgccacgtgcaggtcgcggacatggtgctggagaag
gcgaagcggctcgtcgagtcgggcaagcatgtcgtcatcctcctcgactccatcacgcgg
ctcgcgcgcgcgcacaacaccatcgtgccgcactccgggaagatcctctccggcggcgtc
gacgcgaaggcgctcgagaagccgaagcgcttcttcggctccgcacgcaacatcgacggc
ggcggatcgctcaccatcgtcgccacggcgctcatcgagacgggctcgcgcgccgacgag
gtgatcttcgaggagttcaagggcaccggcaacatggagctcgtgctcgatcgcaagatc
gccgagcgccgcatcttcccggcaatcgacgtgcacaagtccgggacgcgccgcgaggag
ctgctgttcgacaaggacgagacgaaccgcatcttcctgctgcggaacttcctcggcggc
atgaactccgaggacgccatcacgttcctgctcacgcgcatgtcgcgcacgaagaacaac
aaggagttcttcgcgtcgatggcggaggggtga
DBGET
integrated database retrieval system
