Gemmatirosa kalamazoonensis: J421_3401
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Entry
J421_3401 CDS
T03025
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gba
Gemmatirosa kalamazoonensis
Pathway
gba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J421_3401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gba03019
]
J421_3401
03016 Transfer RNA biogenesis [BR:
gba03016
]
J421_3401
Enzymes [BR:
gba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
J421_3401
Messenger RNA biogenesis [BR:
gba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J421_3401
Transfer RNA biogenesis [BR:
gba03016
]
Prokaryotic type
tRNA degradation factors
J421_3401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
PIN_8
PCB_OB
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AHG90938
UniProt:
W0RNB2
LinkDB
All DBs
Position
complement(3932551..3934845)
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AA seq
764 aa
AA seq
DB search
MTQRVERTFAGRKLVIETGRMAKQAAGSALVQFGDTMVLAAVTVSDTQSPLPFFPLTVEY
REKSYAAGKIPGGFIKREGRPHDAEILSARIIDRSIRPLFPEGFKNEVQVFIYVISADQE
NDADVLALVAASYALNASKIPFLGPIAGVRVGRVQENWVLNPTFQQLQYSDLELVVAGSQ
DSIVMVEGGALEVSEEDVVNALQVAHGGVRELIAMQQELLDKAGRVAKMTWTKAEVPENV
SARVKELAEGKIAEAINQPEKHTRVQAVEDVKKAVKEQLLPEFPDNSKDFGSILGDIEYN
ALRGQVLSTGLRVDGRKPTEVRPISIDTKVLPRAHGSALFTRGQTQALVAVTLGTAQDVQ
RLDSIDDAGETEKTFMLHYNFPPFSTGEVRPVRGTSRREIGHGNLAERALQGVLPPFEEF
PYTVRIVSDVLESNGSSSMASVCGGSLALFDAGVPMQAAVAGVAMGLIKEGEKYAILTDI
LGTEDHLGDMDFKVAGTRNGITSIQMDIKIEGLDLRIMTEALAQAKAGRLHILGEMEKAL
GTPRTELSPYAPRIVTVQISPEKIGDLIGPKGKTIRGIQDETGAEITVDDTGTVTIAAVG
GESMERARQMVMAITAEPIVGETYEGTVKSTTAFGAFVEIMPGTEALLHISEMRHARVEK
TEDVVKKGDRVKVKLIDRDERGRLRLSMKALEPKPEGAPEAPAEGNGDRPRGERSERPPR
AESNGGEERAERAPREEGAAAGGGSGRRPRSGPRRGSRDDRGER
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaacgcgtggaacgcacgttcgccggccgtaagctcgtcatcgagacgggccgc
atggcgaagcaggccgccgggtcggccctcgtccagttcggcgacacgatggtgctcgcc
gccgtgacggtcagcgacactcagagtccgctgccgttcttcccgctcacggtcgagtac
cgcgagaagagctacgccgccggcaagatcccgggcggcttcatcaagcgcgagggccgg
ccgcacgacgccgagatcctctccgcccgcatcatcgaccgctcgatccgcccgctcttc
ccggaggggttcaagaacgaggtccaggtcttcatctacgtcatctcggcggaccaggag
aacgacgcggacgtgctggcgctcgtcgccgcgtcgtacgcgctgaacgcgtcgaagatc
ccgttcctcggcccgatcgccggcgtgcgcgtcggccgcgtgcaggagaactgggtcctc
aacccgacgttccagcagctccagtacagtgatctggagctcgtcgtcgccgggtcgcag
gactcgatcgtgatggtcgagggcggggcgctcgaggtgagcgaggaggacgtcgtcaac
gcgctgcaggtcgcgcacggcggcgtgcgggagctcatcgcgatgcagcaggagctgctc
gacaaggccggccgcgtcgcgaagatgacgtggacgaaggccgaggtcccggagaacgtc
agcgcccgcgtgaaggagctcgccgaggggaagatcgccgaggcgatcaaccagccggag
aagcacacgcgcgtgcaggcggtcgaggacgtgaagaaggccgtgaaggagcagctgctg
ccggagttcccggacaacagcaaggacttcggctcgatcctcggcgacatcgagtacaac
gcgctgcgcggccaggtgctctccaccggcctgcgcgtggacggccgcaagcccaccgag
gtgcggccgatctcgatcgacacgaaggtgctgccgcgcgcccacggctcggcgctgttc
acgcgcggtcagacgcaggcgctcgtcgcggtcacgttaggcaccgcgcaggacgtgcag
cgcctcgactcgatcgacgacgcgggcgagaccgagaagacgttcatgctccattacaac
ttcccgccgttctccacgggggaggtgcgtccggtgcgcggcacgagccgccgcgagatc
ggtcatggcaatctggccgagcgcgcgctgcagggcgtgctgccgccgttcgaggagttc
ccgtacacggtccgcatcgtgtccgatgtgctcgagtcgaacggctcctcgtcgatggcg
tcggtgtgcggcggctcgctcgcgctgttcgacgccggcgtgccgatgcaggccgccgtc
gccggcgtggcgatggggctcatcaaggagggtgagaagtacgccatcctcaccgacatc
ctcggcaccgaggaccacctcggcgacatggacttcaaggtcgccgggacgcgcaacggc
atcacctcgatccagatggacatcaagatcgaggggctcgacctgcgcatcatgaccgag
gcgctggcgcaggcgaaggccggccgcctgcacatcctcggcgagatggagaaggcgtta
ggcacgccgcgcacggagctctcgccgtacgcgccgcgcatcgtgacggtgcagatcagc
cccgagaagatcggggacctgatcggcccgaagggcaagacgattcgcggcatccaggac
gagacgggcgccgagatcaccgtcgacgacaccggcacggtcacgatcgccgccgtcggc
ggcgagtcgatggagcgcgcgcggcagatggtcatggccatcaccgccgagccgatcgtc
ggcgagacgtacgaggggacggtgaagagcacgacggcgttcggcgcgttcgtcgagatc
atgccgggcaccgaggcgctgctccacatctccgagatgcgccacgcgcgtgtcgagaag
accgaggacgtggtgaagaagggcgaccgcgtgaaggtgaagctcatcgaccgcgacgag
cgtgggcgtctgcgtctctccatgaaggcgctcgagccgaagccggaaggcgcgcccgag
gcgccggccgagggcaacggcgatcgtccgcgcggggagcgctcggagcggccgccgcgc
gcggagagcaacggcggcgaggagcgcgccgagcgcgcgccccgcgaggagggcgcagcg
gccggtggcggctcggggcgtcgtccgcgcagcggcccgcgacgcggctctcgcgacgac
cgcggcgagcgctga
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