KEGG   Gemmatirosa kalamazoonensis: J421_3401
Entry
J421_3401         CDS       T03025                                 
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
gba  Gemmatirosa kalamazoonensis
Pathway
gba03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gba00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J421_3401
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gba03019]
    J421_3401
   03016 Transfer RNA biogenesis [BR:gba03016]
    J421_3401
Enzymes [BR:gba01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     J421_3401
Messenger RNA biogenesis [BR:gba03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     J421_3401
Transfer RNA biogenesis [BR:gba03016]
 Prokaryotic type
  tRNA degradation factors
   J421_3401
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH-I_KHDC4-BBP KH_KhpA-B S1_2 PIN_8 PCB_OB S1_RRP5
Other DBs
NCBI-ProteinID: AHG90938
UniProt: W0RNB2
LinkDB
Position
complement(3932551..3934845)
AA seq 764 aa
MTQRVERTFAGRKLVIETGRMAKQAAGSALVQFGDTMVLAAVTVSDTQSPLPFFPLTVEY
REKSYAAGKIPGGFIKREGRPHDAEILSARIIDRSIRPLFPEGFKNEVQVFIYVISADQE
NDADVLALVAASYALNASKIPFLGPIAGVRVGRVQENWVLNPTFQQLQYSDLELVVAGSQ
DSIVMVEGGALEVSEEDVVNALQVAHGGVRELIAMQQELLDKAGRVAKMTWTKAEVPENV
SARVKELAEGKIAEAINQPEKHTRVQAVEDVKKAVKEQLLPEFPDNSKDFGSILGDIEYN
ALRGQVLSTGLRVDGRKPTEVRPISIDTKVLPRAHGSALFTRGQTQALVAVTLGTAQDVQ
RLDSIDDAGETEKTFMLHYNFPPFSTGEVRPVRGTSRREIGHGNLAERALQGVLPPFEEF
PYTVRIVSDVLESNGSSSMASVCGGSLALFDAGVPMQAAVAGVAMGLIKEGEKYAILTDI
LGTEDHLGDMDFKVAGTRNGITSIQMDIKIEGLDLRIMTEALAQAKAGRLHILGEMEKAL
GTPRTELSPYAPRIVTVQISPEKIGDLIGPKGKTIRGIQDETGAEITVDDTGTVTIAAVG
GESMERARQMVMAITAEPIVGETYEGTVKSTTAFGAFVEIMPGTEALLHISEMRHARVEK
TEDVVKKGDRVKVKLIDRDERGRLRLSMKALEPKPEGAPEAPAEGNGDRPRGERSERPPR
AESNGGEERAERAPREEGAAAGGGSGRRPRSGPRRGSRDDRGER
NT seq 2295 nt   +upstreamnt  +downstreamnt
atgacgcaacgcgtggaacgcacgttcgccggccgtaagctcgtcatcgagacgggccgc
atggcgaagcaggccgccgggtcggccctcgtccagttcggcgacacgatggtgctcgcc
gccgtgacggtcagcgacactcagagtccgctgccgttcttcccgctcacggtcgagtac
cgcgagaagagctacgccgccggcaagatcccgggcggcttcatcaagcgcgagggccgg
ccgcacgacgccgagatcctctccgcccgcatcatcgaccgctcgatccgcccgctcttc
ccggaggggttcaagaacgaggtccaggtcttcatctacgtcatctcggcggaccaggag
aacgacgcggacgtgctggcgctcgtcgccgcgtcgtacgcgctgaacgcgtcgaagatc
ccgttcctcggcccgatcgccggcgtgcgcgtcggccgcgtgcaggagaactgggtcctc
aacccgacgttccagcagctccagtacagtgatctggagctcgtcgtcgccgggtcgcag
gactcgatcgtgatggtcgagggcggggcgctcgaggtgagcgaggaggacgtcgtcaac
gcgctgcaggtcgcgcacggcggcgtgcgggagctcatcgcgatgcagcaggagctgctc
gacaaggccggccgcgtcgcgaagatgacgtggacgaaggccgaggtcccggagaacgtc
agcgcccgcgtgaaggagctcgccgaggggaagatcgccgaggcgatcaaccagccggag
aagcacacgcgcgtgcaggcggtcgaggacgtgaagaaggccgtgaaggagcagctgctg
ccggagttcccggacaacagcaaggacttcggctcgatcctcggcgacatcgagtacaac
gcgctgcgcggccaggtgctctccaccggcctgcgcgtggacggccgcaagcccaccgag
gtgcggccgatctcgatcgacacgaaggtgctgccgcgcgcccacggctcggcgctgttc
acgcgcggtcagacgcaggcgctcgtcgcggtcacgttaggcaccgcgcaggacgtgcag
cgcctcgactcgatcgacgacgcgggcgagaccgagaagacgttcatgctccattacaac
ttcccgccgttctccacgggggaggtgcgtccggtgcgcggcacgagccgccgcgagatc
ggtcatggcaatctggccgagcgcgcgctgcagggcgtgctgccgccgttcgaggagttc
ccgtacacggtccgcatcgtgtccgatgtgctcgagtcgaacggctcctcgtcgatggcg
tcggtgtgcggcggctcgctcgcgctgttcgacgccggcgtgccgatgcaggccgccgtc
gccggcgtggcgatggggctcatcaaggagggtgagaagtacgccatcctcaccgacatc
ctcggcaccgaggaccacctcggcgacatggacttcaaggtcgccgggacgcgcaacggc
atcacctcgatccagatggacatcaagatcgaggggctcgacctgcgcatcatgaccgag
gcgctggcgcaggcgaaggccggccgcctgcacatcctcggcgagatggagaaggcgtta
ggcacgccgcgcacggagctctcgccgtacgcgccgcgcatcgtgacggtgcagatcagc
cccgagaagatcggggacctgatcggcccgaagggcaagacgattcgcggcatccaggac
gagacgggcgccgagatcaccgtcgacgacaccggcacggtcacgatcgccgccgtcggc
ggcgagtcgatggagcgcgcgcggcagatggtcatggccatcaccgccgagccgatcgtc
ggcgagacgtacgaggggacggtgaagagcacgacggcgttcggcgcgttcgtcgagatc
atgccgggcaccgaggcgctgctccacatctccgagatgcgccacgcgcgtgtcgagaag
accgaggacgtggtgaagaagggcgaccgcgtgaaggtgaagctcatcgaccgcgacgag
cgtgggcgtctgcgtctctccatgaaggcgctcgagccgaagccggaaggcgcgcccgag
gcgccggccgagggcaacggcgatcgtccgcgcggggagcgctcggagcggccgccgcgc
gcggagagcaacggcggcgaggagcgcgccgagcgcgcgccccgcgaggagggcgcagcg
gccggtggcggctcggggcgtcgtccgcgcagcggcccgcgacgcggctctcgcgacgac
cgcggcgagcgctga

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