Gemmatirosa kalamazoonensis: J421_3971
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Entry
J421_3971 CDS
T03025
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gba
Gemmatirosa kalamazoonensis
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gba03032
]
J421_3971
03400 DNA repair and recombination proteins [BR:
gba03400
]
J421_3971
Enzymes [BR:
gba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J421_3971
DNA replication proteins [BR:
gba03032
]
Prokaryotic type
DNA Topoisomerases
J421_3971
DNA repair and recombination proteins [BR:
gba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J421_3971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AHG91508
UniProt:
W0RPS3
LinkDB
All DBs
Position
complement(4596106..4598565)
Genome browser
AA seq
819 aa
AA seq
DB search
MPTKKKDTEPTKAAARKAAPAKATPAKATAKKATAKKAAAKRTLKYQPADDDEPSEPGST
SLVIVESPAKAKTIGKYLGRGYKVRATVGHVLDLPEKKLGIDIEGGFEPELVPIPGKEPV
IADLKKNAKDAREVFIATDPDREGEAIGAHVVSVIKRKGGAPIRRVLFHEITKDGVQRAM
AHATEINEKKVEAQQARRVLDRLVGYKASPILWKTVKKGLSAGRVQTVALRLIVEREREI
RAFVPVEYWSVTALLEKNGQTFTAKLHHVDGKKPELPNEAAAANVLADLRGRRVFPVTDV
KRRERRKNPSAPFTTSTLQQEAAKKLGFGSKRTMRLAQDLYEGIELGKDEGAVGLITYMR
TDSSRVAESAAAEARDYLHTLFGQEYLAAGPQLYESSKSKNTQDAHEGVRPTDPRRRPDQ
VQRYLKEDQFKLYQLIWQRFMASQMAPAVFDTTTVDFELEGAPSTYLFRATGSVVKFQGF
LALYREAREEGEAKALEDEQELPTLEVKEQVPVKEITPAQHFTQPPPRYSEASLVKELER
LGIGRPSTYASIISVLADRRYVNLEQRRFFPTPLGETVEKVMVKKFPDVFNVAFTANMEE
ELDRVEEGEVSWQHVLDEFYTPFSATLNDNDLDQLIAEAHDLSALATEKCPDCGGRLVPK
GGFFGPFVACENHPKNCKYTRPLKGEKKEAIVTDYLCHECGAPMLLRHGRSGDFLGCSRF
PKCRGTRSVPTGVKCPKDGGDISERRSKARGKLFYGCENYPNCDFVVWDKPVPEVCPECG
YVGAEAKSNKTRGAYRRCLKCGNEWDVQTPEEAEEPVAV
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgaagaagaaggacaccgagcccacgaaggcggcggccaggaaggcggcgccc
gcgaaggcgacgcccgcgaaggcgaccgcgaagaaggcgacggcgaagaaggccgccgcc
aagcggacgctcaagtatcagcccgcagacgacgacgagccgtcggagccgggctccacg
tcgctcgtcatcgtcgagtcgcccgcgaaggcgaagacgatcggcaagtacctcggccgc
ggctacaaggtgcgggcgacggtcggccacgtcctcgacctgcccgagaagaagctcggc
atcgacatcgagggcgggttcgagcccgagctcgtgccgatccccggcaaggagccggtc
atcgcggatctcaagaagaacgcgaaggacgcccgcgaggtgttcatcgccaccgacccg
gaccgcgagggcgaggcgatcggggcgcacgtcgtcagcgtgatcaagcgcaagggcggc
gcgcccatccggcgcgtgctgttccacgagatcacgaaggacggcgtgcagcgcgccatg
gcgcacgccaccgagatcaacgagaagaaggtcgaggcgcagcaggcgcgccgcgttctc
gatcgcctcgtcggctacaaggcgagccccatcctctggaagacggtgaagaaggggctc
tccgcgggccgcgtgcagaccgtcgcgctgcgtctcatcgtcgagcgcgagcgcgagatc
cgcgcgttcgtgccggtcgagtactggagcgtgaccgcgctgctcgagaagaacgggcag
acgttcaccgccaagctgcaccacgtcgacggcaagaagcccgagctgcctaacgaggcg
gcggcggcgaacgtcctcgccgacctccgggggcggcgcgtcttcccggtcaccgacgtc
aagcgccgcgagcgccgcaagaacccgtcggcgccgttcaccaccagcacgctgcagcag
gaggccgcgaagaagctcggcttcggctccaagcgcacgatgcggctcgcgcaggatctc
tacgagggcatcgagctcgggaaggacgagggcgcggtcggtctcatcacctacatgcgt
accgactcctcgcgcgtcgccgagagcgcggcggccgaggcgcgcgactacctgcacacg
ctgttcggccaggagtacctcgccgccggcccgcagctctacgagagcagcaagtcgaag
aacacgcaggacgcgcacgagggcgttaggccgacggatccgcggcgccgcccggaccag
gtgcagcgctatctcaaggaggaccagttcaagctctaccagctcatctggcagcgcttc
atggcctcgcagatggcgcccgccgtgttcgacacgacgacggtggacttcgagctcgag
ggcgcgcccagcacgtatctgttccgcgccaccggctccgtcgtgaagttccagggcttc
ctcgcgctctaccgcgaggcgcgcgaggagggcgaggcgaaggcgctcgaggacgagcag
gagctgccgacgctcgaggtgaaggagcaggtgccggtgaaggagatcacgccggcccag
cacttcacgcagcccccgccgcgctactccgaggcgagcctcgtgaaggagctcgagcgg
ctcggcatcggccggccgtccacctacgcgagcatcatctcggtgctcgccgaccgccgc
tacgtgaacctcgagcagcgccgcttcttccccaccccgctcggcgagacggtcgagaag
gtcatggtgaagaagttccccgacgtgttcaacgtcgcgttcacggcgaacatggaggag
gagctcgaccgcgtggaggagggcgaggtgtcgtggcagcacgtcctcgacgagttctac
acgccgttctccgccacgctgaacgacaacgacctcgatcagctcatcgccgaggcgcac
gacctgtcggcgctcgcgacggagaagtgcccggactgcggcggtcggctcgtgccgaag
ggcggcttcttcgggccgttcgtcgcctgcgagaaccatccgaagaactgcaagtacacg
cggccgctgaagggcgagaagaaggaggcgatcgtcaccgattacctctgccacgagtgc
ggcgcgccgatgctgctccgccacggccgctcgggcgacttcctcggctgcagccgcttc
ccgaagtgccgcggcacgcgctccgtgccgacgggcgtgaagtgcccgaaggacggcggc
gacatctccgagcgccgctcgaaggcgcgcggcaagctgttctacggctgcgagaactac
ccgaactgcgacttcgtggtgtgggacaagccggtgcccgaggtgtgccccgagtgtggc
tacgtcggcgcggaggcgaaatccaacaagacgcgcggggcgtaccgtcggtgcctgaag
tgcggcaacgagtgggacgtccagacgccggaggaggccgaagagccggtcgccgtctga
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