Gemmatirosa kalamazoonensis: J421_4258
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Entry
J421_4258 CDS
T03025
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gba
Gemmatirosa kalamazoonensis
Pathway
gba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J421_4258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gba03019
]
J421_4258
Enzymes [BR:
gba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J421_4258
Messenger RNA biogenesis [BR:
gba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J421_4258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
AAA_19
AAA_22
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AHG91795
UniProt:
W0RNA2
LinkDB
All DBs
Position
complement(4953759..4955186)
Genome browser
AA seq
475 aa
AA seq
DB search
MSFSSFELHPSLLRGVQSMGFAAPTPIQQQSVPPAIAGRDLLACAMTGSGKTAAFLLPIV
QRLIDRPRGTTRALILTPTRELAAQIEEHLRALAAHTKVTGAAVFGGVGMGPQEAAFRRG
VDILVATPGRLLDHLRMPYARLDGIEMLVLDEADRMLDMGFLPDIKRVLAHLPAKKQTML
FSATMPEPIARLSRDLLHDPVAINQERKAAPATGVEQMLYPVSEALKAQLFLELIRRGEV
KDVIVFTRTKHRSNRLFEFLTRHGVSCERIHGNRSQAQRTQALDGFKNGRVQVLVATDIV
ARGIDVEELSHVVNFDVPHLPEDYIHRVGRTARAEATGDAITFVSPEEENDLRAIERAIG
KRIARRTLTGFDYQARPTERFEIPIAERIADIRKRKAEERQRAREKAERKAQRATDEEAR
RAEKAQPRGGRGQNGASSGASAYAAPSGSGAALATPRRRRRGGRGGQRPNGNGNS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttctcgtctttcgagcttcacccctcgctgctccgcggcgtgcagtcgatgggc
ttcgccgccccgacccccatccagcagcagtcggtcccgccggccatcgccggacgcgac
ctcctggcctgcgcgatgacgggcagcggcaagaccgccgccttcctcctcccgatcgtc
cagcggctgatcgaccggccgcgcggcaccacccgcgcgctcatcctcacgccgacgcgt
gagctggccgcccagatcgaggagcacctgcgcgcgctggccgcccacaccaaggtgacg
ggcgcggccgtgttcggtggcgtcggcatggggccgcaggaggccgcgttccgccgcggc
gtcgacatcctcgtcgccacgccgggccggctgctcgaccacctgcgcatgccgtacgcg
cggctggacgggatcgagatgctcgtcctcgacgaggccgaccgcatgctcgacatgggc
ttcctgccggacatcaagcgcgtgctcgcgcacctgccggcgaagaagcagacgatgctg
ttctccgccaccatgcccgagccgatcgcgcgcctgtcgcgcgacctgctgcacgacccg
gtggcgatcaaccaggagcggaaggcggccccggccaccggcgtggagcagatgctctac
ccggtctccgaggcgctgaaggcgcagctcttcctcgagctgatccgccgcggcgaagtg
aaggacgtcatcgtcttcacgcgcacgaagcaccgctccaaccggctgttcgagttcctc
acgcgccacggcgtgtcgtgcgagcgcatccacggcaaccgctcgcaggcgcagcgcacc
caggcgctcgacggcttcaagaacggccgcgtgcaggtgctcgtcgcgaccgatatcgtc
gcccgcggcatcgacgtcgaggagctgagccacgtcgtgaacttcgacgtgccgcatctg
ccggaggactacatccaccgcgtgggccgcaccgcgcgcgccgaggcgaccggcgacgcg
atcacgttcgtctcgccggaggaggagaacgaccttcgcgcgatcgagcgggcgatcggc
aagcgcatcgcgcgccgcacgctcaccggcttcgactaccaggcgcggccgaccgagcgg
ttcgagatcccgatcgccgagcgcatcgccgacatccgcaagcgcaaggcggaggagcgc
cagcgcgcgcgcgagaaggccgagcgcaaggcgcagcgcgcgaccgacgaggaggcgcgc
cgggccgagaaggcgcaaccgcgcggcggccgcgggcagaacggcgcgtcgagcggcgcg
agcgcctacgccgcgccgtcgggcagcggcgccgccctcgccaccccgcgccgccgtcgt
cgcggcggacgcggtgggcagcggcctaacggaaacggcaattcgtga
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