Gemmatirosa kalamazoonensis: J421_4393
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Entry
J421_4393 CDS
T03025
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
gba
Gemmatirosa kalamazoonensis
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gba03019
]
J421_4393
Enzymes [BR:
gba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J421_4393
Messenger RNA biogenesis [BR:
gba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J421_4393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHG91930
UniProt:
W0RNL8
LinkDB
All DBs
Position
complement(5104969..5107506)
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AA seq
845 aa
AA seq
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MPSKTLPLPPLPIDDVLPALRDALRGRSSVVLQAPPGAGKTTRVPLALLGEPWVDGRIVM
LEPRRLAARAAARHMARLLDEDVGATVGYRVRLDTRVSRATRIEVVTEGILTRMLQRDPA
LDGTSAVIFDEFHERSLHADLGLALALQTQSVLRPELRLLVMSATLDGERVARMLGDAPV
VTSAGRSWPVEVRWRATRPAPREVEAATALTVREAIRTHDGDVLVFLPGAAEIRRVANLL
GGLPDDVSVRPLHGSMPPEAQDAAIAPSPVGRRKVVLATNIAETSLTIEGIRVVVDTGLA
RVPRFSPRTAMTRLTLARVSRASATQRCGRAGRLGPGVCHRLWPEHEHHHLLPDTPAEIL
DADLAPLALELAAAGVIDPAELTWLDPPPDATYRQARELLASLGALGGDGRVTAHGRRMA
ELPLHPRLAHMVLRARELSLGGLACDLAALLEERDVLRAAAAPARPDADVRLRVEVLRGA
GSGDTIAAAHGATVDHDALRRVRLEARALRASLGLGHPERSGGDACGLLLALAYPDRVAQ
RRPGAGGRYLLANGRGATFDDGQPLATEPYVVAAELGGTGSEARVELAAPLAIDDWLRSG
DAPLTRDDELAWDADAGVVRARVVERLGAIVLREIPDPSPDPEAVAAALVDAIRAGGLGM
LAWSEDASRLRERLAFLHALEPSAWPDVSDDALLATLDAWLAPRLWGVRRRDELARVDVG
EALRDRLTRQQRAALDDLAPSHVVVPSGSRVRIDYATPDAPVLAVRLQELFGAVETPRVG
GGRVPLTLHLLSPAYRPVQVTRDLAGFWRTSYFDVRRELRGRYPKHEWPEDPLAAQPTAR
AKRRS
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
gtgccgtcgaagaccctcccgctcccgccgctcccgatcgacgacgtcctgcccgcgctg
cgcgacgcgctgcgcgggcgttcgtctgtcgtgctccaggcgccgccgggcgccggcaag
acgacgcgcgtcccgctcgcgctcctcggcgagccctgggtcgacggccggatcgtgatg
ctggagccacgccgcctcgccgcccgcgccgccgcacgccacatggcgcggctcctcgac
gaggacgtcggcgcgaccgtcggctaccgcgtgcggctcgacacgcgcgtgagccgcgcg
acgcgcatcgaggtcgtcaccgaggggatcctcacgcgcatgctgcagcgcgatccggcg
ctcgacggaacctcggccgtgatcttcgacgagttccacgagcggagcctgcacgccgac
ctcgggctcgcgctcgcgctgcagacgcagagcgtgctgcgccccgagctgcggctgctc
gtcatgtccgccacgctcgacggcgagcgcgtggcgcgaatgctcggcgatgcccccgtc
gtcacgagcgcggggcggagctggccggtcgaggtgcgatggcgcgccacgcggcccgca
ccgcgcgaggtcgaggcggcgacggcgctgacggtgcgcgaggcgatccgcacgcacgac
ggcgacgtgctcgtgttcctccccggcgccgcggagatccggcgcgtcgccaatctgttg
ggcgggctgcccgacgacgtgtcggtgcggccgctccacggcagcatgccgcccgaggcg
caggatgcggcgatcgcgccgtcgcccgtcgggcgacgcaaggtggtgctcgcgaccaac
atcgccgagacgagcctcaccatcgaggggatccgcgtcgtcgtcgacacggggctcgcg
cgcgtgccgcggttctcgccgcgcaccgccatgacgcgcctcacgctcgcccgcgtgtcg
cgcgcgtcggccacgcagcggtgcgggcgcgcgggacgactcggccccggcgtctgccac
cggctgtggcccgagcacgagcaccaccacctgctcccggacacgccggccgagatcctc
gacgcggacctcgcgccgctcgcgctggagctcgcggccgccggcgtgatcgacccggcg
gagctgacgtggctcgacccgccccccgacgcgacgtaccggcaggcgcgcgagctgctc
gcgtcgttgggcgcgttgggcggggacgggcgtgtcaccgcgcacgggcggcgcatggcg
gagctgccgctgcacccgcgcctcgcccacatggtgctgcgcgctcgggagctctcgttg
ggcggcctcgcctgcgacctcgcggcgctgctcgaggagcgggacgtgctgcgcgccgct
gcggcgcccgcgcgtcccgacgccgacgtgcggctccgcgtcgaggtcctccgcggcgcc
ggcagcggcgacacgatcgccgcggcgcacggcgcgacggtcgaccacgacgccctgcgc
cgcgtgcggctcgaggcgcgcgcccttcgcgcgtcgttgggcctgggtcatcccgagcga
agcgggggagacgcgtgcgggctgctgctcgcgctcgcgtacccggaccgcgtcgcgcag
cgccggcccggcgcgggcggccgctacctgctcgcgaacggccgcggggcgacgttcgac
gacggccagccactcgccacggagccgtacgtggtcgccgcggagctcggcgggaccggg
agcgaggcgcgcgtggagctcgccgcgccgctcgcgatcgacgactggctccgctccggc
gatgcgccgctcacacgcgacgacgagctcgcgtgggacgccgacgcgggcgtcgtgcgc
gcgcgcgtcgtggagcgactcggcgcgatcgtgctgcgcgagatcccggatccgagcccc
gaccccgaggcggtcgccgcggcgctcgtcgacgccattcgcgccggggggctcgggatg
ctcgcgtggagcgaggacgcgagccggctgcgcgagcgcctcgcgttcctgcacgcgctg
gagccgtcggcgtggcccgacgtctccgacgacgcgctgctcgcgacgctcgacgcgtgg
ctcgcgccgcggctgtggggcgtacgccggcgcgacgagctggcgcgcgtcgacgtcggc
gaggcgctgcgcgaccgcctcacgcgtcagcagcgcgccgcgctcgacgatctggcgccg
tcgcacgtcgtcgtgccgagcggctcgcgcgtccgcatcgactacgcgacccccgacgcg
ccggtgctcgccgtccggctgcaggagctgttcggggccgtggagacgccgcgggtcgga
gggggccgcgtgccgctcacgctgcacctgctgtcgccggcctaccgtccggtgcaggtc
acgcgcgacctcgcggggttctggcgcacgagctacttcgacgtccggcgcgagctgcgc
gggcgctacccgaagcacgagtggcccgaggatccgctcgccgcgcagccgaccgcacgc
gcgaagcggcggtcctga
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