Gemmatirosa kalamazoonensis: J421_4442
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Entry
J421_4442 CDS
T03025
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gba
Gemmatirosa kalamazoonensis
Pathway
gba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J421_4442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gba03019
]
J421_4442
Enzymes [BR:
gba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J421_4442
Messenger RNA biogenesis [BR:
gba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J421_4442
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
SNF2-rel_dom
AAA_19
Hydrolase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHG91979
UniProt:
W0RLL5
LinkDB
All DBs
Position
complement(5158343..5159506)
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AA seq
387 aa
AA seq
DB search
MESIENPATPTFAELGLAAPILATVEAAGYDTPTPIQAQAIPLVLKGRDVMGLAQTGTGK
TAAFALPILHRLLDGPRRTRVLVLTPTRELCMQVEENFRRYAAVAGLDVVAVFGGVPYEP
QEAALRAGVDVVVATPGRLLDHLEKGNADVELLEALVLDEADRMLDMGFAPQINRIVEQI
CTYRQTLLFSATMPPEVEALARKYLRRPVVVQVGRRNENTSTVTHAVYPVPRDRKSSLLA
ELLRKPEMDTVLVFTRTKPGADRVVRHLEREGITAVAMHGDKTQAQRMDALEQFRSGAVR
VLVATDIAQRGLDISGITHVINYDVPEQAEDYVHRIGRTGRAAATGDAYTFMAPDEIAMV
RLIERVTGQEIPRISVPGYDFGTLAAD
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgatagagaacccggcgacgcccacgttcgccgagctcggtcttgccgcgccg
atcctcgccacggtcgaggcggccgggtacgacacccccacgccgatccaggcgcaggcc
atcccgcttgtgctgaaggggcgcgacgtcatggggctggcgcagacgggcaccggcaag
acggcggcgttcgccctgccgatcctccaccgcctgctcgacggcccgcgccgcacgcgc
gtgctcgtgctcacgccgacgcgcgagctgtgcatgcaggtggaggagaacttccggcgc
tacgccgcggtcgccggcctcgacgtcgtcgcggtgttcggcggcgtgccgtacgagccg
caggaggcggcgcttcgcgcgggagtggacgtcgtcgtggcgacgccaggacggctgctc
gaccatctcgagaaggggaacgcggacgtcgagctgctggaggcgctcgtgctcgacgag
gcggaccggatgctcgacatgggcttcgcgccgcagatcaatcgcatcgtcgagcagatc
tgcacgtatcgccagacgctcctgttcagcgcgacgatgccgcccgaggtggaagcgctc
gcgcggaagtacctgcgccgtccggtcgtcgtgcaggtggggcgccgcaacgagaacacg
tccacggtgacgcacgcggtctacccggtgccgcgcgaccgcaagagctccctgctcgcc
gagctgctgcgcaagccggagatggacacggtgctggtgttcacgcgcacgaagccgggc
gccgatcgcgtcgtgaggcacctcgagcgcgaggggatcacggcggtcgcgatgcacggc
gacaagacgcaggcacagcgcatggacgcgctcgagcagttccgcagcggcgccgtgcgg
gtgctcgtggcgaccgacatcgcgcagcgcgggctcgacatcagcggcatcacgcacgtc
atcaactacgacgtgccggagcaggccgaggactacgtgcaccgcatcgggcgcacgggg
cgtgcggcggccaccggcgacgcgtacacgttcatggcgcccgacgagatcgcgatggtg
cggctcatcgagcgcgtgacggggcaggagatcccgcgcatctcggtgccggggtacgac
ttcgggacgctggccgccgactga
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