Gemmatirosa kalamazoonensis: J421_5475
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Entry
J421_5475 CDS
T03025
Name
(GenBank) sigma-54 factor interaction domain-containing protein
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
gba
Gemmatirosa kalamazoonensis
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gba03000
]
J421_5475
Transcription factors [BR:
gba03000
]
Prokaryotic type
Helix-turn-helix
Other families
J421_5475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
AAA_5
HTH_8
Mg_chelatase
AAA
AAA_2
AAA_16
DUF1003
AAA_22
MCM
Motif
Other DBs
NCBI-ProteinID:
AHG93010
UniProt:
W0RRR0
LinkDB
All DBs
Position
p1:982146..983747
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AA seq
533 aa
AA seq
DB search
METTAPARSQLEMLRRVTRSMATTHDLSTILRSIATALVEHGGASVARVFLYLADDECEI
CRAGRPAEAVPADGERGLHLSASAGILGTRYDGHDHYIPLSFPNPLSTVARERLPFLTGD
LIGEGRTDVTPEILARYHEYGIVSAGACPLDFRGELLGVIGMLSRRRFDPKEFALLGIFA
DQAALAIKSARMFTEVERYRDRLQEENAYLQEEIRAEHGFEQIVGESPALRAVLRKVKQV
APVETTVLLTGETGVGKELVARAIHALSPRASRALVKVNCGAISPSLVESELFGHERGAF
TGALQRRIGRFELADKGTLFLDECGELPADTQVKLLRVLQEGELERVGGTRPITVDVRLI
AATNRDLEHEVDERRFRADLFYRLNVFPVRIPPLRERRADIAPLVRYFLAHFRRRLGKPL
RGVTKEGMELLERYDWPGNIRELQNVVERACVLATGPMVDVADALGGASADASTVEAPIA
TLDEHERQQIRRALAATHGRVHGRDGAAALLGINASTLRSRMQKHGLSARGVS
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
gtggagacgaccgcgcccgcacgctcgcagctggagatgctgcgtcgcgtgacccgcagc
atggccacgacgcacgatctctccacgatcctccgctcgatcgcgaccgcgctcgtggag
cacggcggagcgtcagtggcgcgcgtgttcctctatctcgccgacgacgagtgcgagatc
tgccgcgccggccgccccgccgaagccgtgcccgccgacggcgagcgcgggctccacctc
tccgcgagcgccggcatcctgggcacgcgttacgacggccacgatcattacatcccgctg
tcgttcccgaacccgctctccaccgtggcgcgcgagcggctgccgttcctcacgggggat
ctcatcggggagggccgcaccgacgtgacaccggagatcctcgcgcgctaccacgagtac
ggcatcgtctcggccggcgcgtgcccgctcgacttccgcggcgagctgctcggcgtcatc
ggcatgctgagccggcggcggttcgacccgaaggagttcgcgctgctcggcatcttcgcc
gaccaggccgcgctcgcgatcaagagcgcgcgcatgttcaccgaggtggagcgctaccgc
gaccggctgcaggaggagaacgcgtatctccaggaggagatccgcgcggagcacggcttc
gagcagatcgtgggcgagagtcctgccctgcgcgcggtgctgcgcaaggtgaagcaggtg
gcgccggtcgagaccacggtgctgctcaccggcgagaccggcgtgggcaaggagctcgtc
gcgcgcgcgatccacgcgctcagcccacgcgcgtcgcgcgcgctcgtgaaggtgaactgc
ggcgcgatcagcccgtcgctcgtcgagagcgagctgttcggccacgagcgcggcgcgttc
accggcgcgctgcagcgtcgcatcggccggttcgagctggccgacaaggggacgctgttc
ctcgacgagtgcggcgagctgccggccgacacgcaggtgaagctgctgcgcgtgctgcag
gagggagagctggagcgcgtcggcggcacgcgcccgatcaccgtggacgtgcggctcatc
gcggcgacgaaccgcgacctggagcacgaggtcgacgagagacgcttccgcgcggatctc
ttctaccggctgaacgtcttccccgtccgcatcccgccgctccgcgagcgacgcgccgac
atcgcgccgctcgtgcggtacttcctcgcgcacttccgacgccgactcggcaagccgctg
cgcggcgtgacgaaggaagggatggagctgctggagcgctacgactggccggggaacatc
cgcgagctgcagaacgtggtcgagcgcgcgtgcgtgctcgcgacgggaccgatggtcgac
gtcgccgacgcgctgggcggcgcgagcgccgacgcgtccaccgtggaggcgccgatcgcg
acgctcgacgagcacgagcggcagcagatccgccgcgcgctcgccgccacgcacggacgc
gtgcacggacgcgacggcgccgccgcgctgctcggcatcaacgccagcacgctgcggtcg
cgcatgcagaagcacggcctgtccgcgcgaggcgtctcatga
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