Gemmatirosa kalamazoonensis: J421_5518
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Entry
J421_5518 CDS
T03025
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gba
Gemmatirosa kalamazoonensis
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gba03016
]
J421_5518
Enzymes [BR:
gba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J421_5518
Transfer RNA biogenesis [BR:
gba03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J421_5518
Prokaryotic type
tRNA splicing ligases
J421_5518
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AHG93053
UniProt:
W0RTY1
LinkDB
All DBs
Position
p1:complement(1034132..1035376)
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AA seq
414 aa
AA seq
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MSHPDAPPIKTFGTHDDTTLRQIADVASRADRAALMADGHVGYVMPIGGVAAYRERVSVV
GVGVDIGCGNAAIRTDRTLADLGGDPDEVHAHLETVADAIAASVDFGMGRRNRAEDAPID
HPLFDDPAWDAVPAKERGALKHKARQQLGTVGGGNHYVDLFADESGTLWVGVHFGSRGFG
YTVATSFIAMGQGKKWGERAPEREVLLELRSPLGHDYWHLMNLAGRYAYAGREWVARKVV
RLLGAGEVELVHNHHNFGWMERHDGEDLVVIRKGATPAFPGQKGFVGGSMGDDAVIVQGT
LGAVGDVAESQRAALYSTVHGAGRVMSRTAAAGKRERRTGRVITPGRVSPDEMHAWLRAK
GVILRGGGLDESPQVYRRLPEVLAAQEGTIEVLHRLRPLVVVMAGPDEFDPYKD
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccaccccgacgccccgcccatcaagacgttcggcacccacgacgacaccacgctc
cgccagatcgccgatgtcgccagccgggccgatcgggccgcgctcatggcggacgggcac
gtcggttatgtgatgccgatcggcggcgtggcggcgtaccgcgagcgggtgtccgtggtc
ggcgtcggcgtggacatcgggtgcggcaacgccgccatccgcaccgaccgcacgctcgcg
gacctcggcggcgaccccgacgaggtgcacgcgcacctcgagaccgtcgccgacgccatc
gccgcgtcggtcgacttcggcatgggccgccggaatcgggccgaggacgcgcccatcgat
cacccgctgttcgacgaccccgcgtgggacgccgtgcccgcgaaggagcgcggcgcgctg
aagcacaaggcgcggcagcagctcggcaccgtcggcggtggcaaccactacgtggatctg
ttcgccgacgagtcggggacgttgtgggtcggcgtccacttcggcagccgcggcttcggc
tacaccgtggcgacgagcttcatcgccatgggccagggaaagaaatggggcgagcgcgct
cccgagcgcgaggtgctgctcgagctgaggtctccgttaggccacgactactggcacctc
atgaacctcgcggggcgctacgcatacgccggtcgcgagtgggtcgcgcgcaaggtcgtg
cgactgttaggcgccggcgaggtggagctcgtgcacaaccaccacaacttcggctggatg
gaacgacacgacggcgaggacctcgtcgtcatccgcaagggcgccaccccggcgttcccg
ggccagaagggcttcgtcggcggctccatgggcgacgatgccgtgatcgtgcaggggacg
ttgggcgccgtcggcgacgtcgccgagtcgcagcgcgcggcgctctactccaccgtgcac
ggcgccggccgcgtcatgtcgcgcaccgccgccgcgggcaagcgcgagcgtcgcaccggc
cgcgtcatcacgcccggccgcgtgtcgcccgacgagatgcacgcgtggctccgcgcgaag
ggcgtcatcctccgcggcggtgggctcgacgagagcccgcaggtctaccgccgtcttccc
gaggtgctcgccgcgcaggagggcacgatcgaggtgctgcaccgcctccgcccgctcgtc
gtcgtcatggccgggccggacgagttcgacccatacaaggactga
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