Candidatus Comchoanobacter bicostacola: MMH89_02835
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Entry
MMH89_02835 CDS
T08376
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gbac
Candidatus Comchoanobacter bicostacola
Pathway
gbac03410
Base excision repair
gbac03430
Mismatch repair
gbac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MMH89_02835 (recJ)
03430 Mismatch repair
MMH89_02835 (recJ)
03440 Homologous recombination
MMH89_02835 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbac03400
]
MMH89_02835 (recJ)
DNA repair and recombination proteins [BR:
gbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MMH89_02835 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MMH89_02835 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MMH89_02835 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UTC24159
UniProt:
A0ABY5DJQ9
LinkDB
All DBs
Position
complement(586973..588682)
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AA seq
569 aa
AA seq
DB search
MKIQRRTVNSSTDQVLDSDPVIDRIYKGRNAQSKDEFDYALAQLLPYHLLKGIDACCSWL
YDAFKAQDRICIIGDYDVDGATSTTVMLKGLAGLGFTDVCYMIPNRIKDGYGLTPALVDR
AISMQAQRIITVDNGIVSYQGVDYANANGVSVLITDHHMAAEKLPEAVVVNPNQLDCTFP
SKTLAGVGVAYYVLIAFRAYLRDQGHDLRFNLLELIDIVALGTVADCVPLDKNNRLLVHH
GLKRMRSGQVSHGIAALLSIAKRNPKLLASDDLGFAVAPRLNAAGRLDDMSIGVQCLMSD
SAQEAHSYAQTLDSINLTRREIQANMLDEAQKSLETVDVKNEKIAIVYGEKWHEGIIGLV
ASMLKETHNIPAIAMANDSDNTILKGSCRSIPGLNIRDVLVDFDLQHPGVLIKFGGHAMA
AGLSLNASRLTDFTEGMRALIQEKVTDDMLQKCILVDGPLPQSHRNLPFARLLLTKGPWG
QCFEKPVFDDVFTLESVRKVGQAHLKLSVRDSEQQYDAIWFFCPESWFAVRAKQVRLIYA
LSINDFNGKRSVQLMVQHAQVVESLPIVS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatacagcgtcgcacagtcaactcaagtacggatcaggtgctcgactcagatcct
gtgattgatcgaatctataaaggtagaaatgcacagtcaaaagatgagtttgattatgcc
ttagctcagttgttaccttatcatttacttaaaggtatagatgcatgctgttcatggttg
tatgacgcgtttaaagcacaagatcgtatttgtattattggtgattatgatgttgatgga
gcaacctctacaacagtgatgcttaagggattggcgggcctcggttttacagatgtttgt
tatatgatcccgaatcgaatcaaagatggctatggactaactcctgcactggttgatcgt
gcgatttcgatgcaggctcagcgtatcattacagtagacaatggcattgtgagttatcag
ggggttgattatgcgaatgcgaatggtgtttctgtgttaataacagatcatcatatggca
gctgaaaagctacctgaggcggttgtcgtcaatcctaatcagctagattgtacgttccca
agtaaaacgcttgcaggggtgggtgtagcttactatgtgttgattgcatttagagcgtat
ttacgagatcaagggcatgaccttaggtttaatctgttggagctgatcgatattgttgcc
ttgggtacggttgctgattgtgtgccgttggataaaaataatcgtttattggtacatcat
ggattaaagcggatgcgatcagggcaagtgagtcatggtatcgcagcgctattgagtatt
gctaagcgtaatcctaagttactagcatcagatgatctgggttttgcggtagcaccacgg
ctcaatgcagcgggcaggcttgatgatatgagtatcggcgttcagtgcttgatgtcggat
agtgctcaagaggcgcatagttacgcacagactttagatagtattaatctgactcgtcga
gagattcaagcaaatatgcttgatgaagctcaaaaatcattagaaacggttgatgtaaag
aatgaaaaaattgcaattgtctatggggagaaatggcacgaagggattattgggctcgtt
gcctcaatgttaaaagagacccataatattcctgcaattgctatggctaacgattctgat
aacacaatacttaaaggatcatgccgatcgatccctggattgaatattagagatgtttta
gttgattttgatctacagcacccaggtgttttaattaagtttggtggccacgcaatggct
gcgggtcttagtttgaatgcgagtagattgacagactttactgaaggcatgcgcgcattg
attcaagaaaaagtaactgatgatatgctgcaaaaatgtattttagttgatggaccgtta
cctcaatcacacagaaatttaccctttgctagattgctcttaaccaaaggcccttggggg
caatgttttgagaagccagtctttgatgatgtgtttacattagaatcagtgcgtaaagtt
gggcaggctcatttaaagctttctgtacgtgatagtgagcagcagtatgatgcgatttgg
ttcttttgtccggagtcttggtttgcggttagagcaaagcaagttaggcttatatatgcg
ctaagtattaatgactttaatgggaaaaggtcagtgcaattaatggtccagcatgctcag
gttgttgagtctctccccattgtttcatga
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