Granulibacter bethesdensis NIH3.1: GbCGDNIH3_0149
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Entry
GbCGDNIH3_0149 CDS
T03155
Name
(GenBank) ATP-dependent helicase hrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
gbc
Granulibacter bethesdensis NIH3.1
Brite
KEGG Orthology (KO) [BR:
gbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbc03019
]
GbCGDNIH3_0149
Enzymes [BR:
gbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GbCGDNIH3_0149
Messenger RNA biogenesis [BR:
gbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GbCGDNIH3_0149
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
WHD_HA2
ResIII
CON_HrpB
AAA_22
AAA_19
HA2_C
Motif
Other DBs
NCBI-ProteinID:
AHJ61897
UniProt:
A0AAN0VEQ8
LinkDB
All DBs
Position
complement(167194..169680)
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AA seq
828 aa
AA seq
DB search
MMRPGLCFPARRDMGRTMSVSDLPVKHVLPALRETLIRGNAVLVAPPGAGKTTTVPLFLL
GEEAPFRRMVMLEPRRLAARAAASRMASLIGQKPGELVGYRTRTDSAVSDATRIEVITEG
LLVRRLQSDPGLEGVDLVILDEIHERSLDADIALAFCLDLQRALRPELRLLAMSATADGA
RLSTLMQAGIVESAGQAHPVGITHSARDLTHLRDIPEATARAVRTALSDHQGDLLAFLPG
MGEIRRVQTMLDGCGATVLPLHGDLPPAEQDRTLRPLENGGRRVVLATSIAETSLTVPGV
RIVVDSGWRRAPRLDTSTGLTRLATLRISRAAAAQRAGRAGREAPGIAIRLWSQAMERGM
APFDRPEILEAELSGLVLDCAGWGASPSDLPFPDAPPDGAVAAARSLLGDLGALDPEGRI
TEAGRQMARIGAHPRLAAMMLAARTLPERLLAADIAALLEERDPFRNPDAPADLMLRLEA
LRHEDPAADREALARIRQTAAQYRRRLKTASPAIASPDPAEASEAGPDAVARLIVAAFPD
RVAQARGEAGSFRLSGGGGAKVAVNDPLARSRLLAVASLEVKTAPRIRLAVPVEVDTLRD
LAHETTETMHDSTSGTVYIRRKLRLGALVLEDRLEKADPAAHPGASDAMAQAAFAALVWS
DTARQLRARVELMRTLEPDKDWPDWSDDALAATAPDWLGGWLGQGVKPASLDVAAMLRAA
LPWQLAQRLDKEMPTHLSLAGNARAGVDYLQPVPVASARAQAFYGLQHTPQLAGGRIPLR
LALLSPAGRPVAITADLAGFWQGGWADVRRDMRGRYPRHRWPENPAEG
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgaccggggctttgtttcccggcacgccgtgatatggggcggaccatgagcgtc
tccgatcttccggtcaaacatgtcctgccagcgttgcgcgaaaccctgatccggggcaac
gcggttctggtcgcaccgccgggtgcaggcaagaccacgaccgttccgctgtttctgctc
ggcgaggaggcccctttccggcgcatggtgatgctggagccacgtcgtctggccgcccgc
gctgctgcttcccgcatggcgtcactgatcgggcagaaaccgggagagttggtcggctac
cgcacacggaccgacagcgccgtctccgatgccacaaggatcgaggtgataacggaaggg
ctgctggtccgccgtctgcaatccgatccggggctggagggggtggatctggtcatcctc
gatgaaatccacgaacgcagtctggatgcggatatcgccctcgccttctgtctagacctg
caacgcgccttgcggcccgaattgcggctgctggctatgtcggccaccgcggatggtgca
cgcctttcgaccctgatgcaggccggcatcgtcgaaagcgccggacaggcccatccggtc
ggcatcacccatagcgcgcgcgacctgacccatttgcgcgacatccccgaggccacggcg
cgcgcggtcaggacggccctgtccgatcatcagggtgacctgctggccttcctgcccggg
atgggagaaatccgccgcgtgcaaaccatgctggatgggtgtggcgccaccgtgctgccg
ctgcatggcgatctgccgcccgccgagcaggatcgcacccttcgtccactggaaaatggg
ggacggcgcgttgtgctggcgacctcgattgccgaaacctccctcactgttccgggtgta
cggatcgtggtggatagcggctggcgtcgtgcgccgcgtctcgacacttcgaccggtctg
acccggctggcaaccctgcgcatcagccgtgccgccgccgcccagcgagcgggacgcgcc
ggtcgtgaagcgccgggtatcgcgatccggctctggagtcaggctatggagcggggcatg
gcacccttcgaccggcctgaaattctggaggccgaactgtccgggctggtgctggattgc
gcgggctggggcgcatcaccctccgacctgccgtttccggatgctccccctgatggcgcg
gtggcggcggcacggtcgctgttgggtgatctcggtgccctcgatcctgaaggccgcatc
acggaagcgggtcggcagatggcacggatcggcgctcatcccaggctggctgccatgatg
ctggctgcccgcacccttccagagcgcctgctggccgccgatattgccgccctgctggag
gaacgggacccgttccgcaacccggatgctcccgccgacctcatgctgcggctggaggcc
ctgcgccatgaggatcctgcggccgatcgcgaggcgctggcccgtatccgccagacggcg
gcccagtatcgccgccgtctgaaaaccgccagccccgctatcgccagccccgatccggcg
gaagccagcgaggcagggcctgatgccgtggccaggctgattgtagccgctttcccggac
cgggtcgcacaggcgcggggagaggcaggcagcttccgtctctccggcggaggcggagca
aaagtagccgtgaatgatccccttgcccgatcccgattactcgctgtcgcctcgctggaa
gtgaaaacggcaccgcgtatccggctggccgtgccggtagaggtcgataccctgcgcgac
ctggcccatgaaacgaccgaaacgatgcatgattccaccagcggcacggtctatatccgc
cgcaagctgcgtctgggcgcgctggtgctggaagatcgtctggagaaagccgatcctgcc
gcccatcccggtgcctccgacgctatggcacaggccgccttcgccgctctggtctggagc
gataccgcccggcagctacgcgcccgggtagagctgatgcgcacattggaaccggacaaa
gactggccggactggtccgatgatgctctggccgccaccgccccggactggctcggcgga
tggctgggacaaggcgttaaacccgcctccctcgatgtagccgccatgctgcgggccgcc
ctgccatggcaactggcccagcgtctggacaaggagatgcccacccatctttccctggcc
gggaatgcacgcgcaggcgtggattatctgcagcctgtaccggttgcctccgcccgggcg
caggctttctacgggttgcagcacacgccgcaactggccggtggacgtattccgctgcga
ctggcattgctctcacccgccggcaggccggtggccattaccgccgacctggccggtttc
tggcagggaggctgggccgatgtccgccgtgacatgcgcgggcgctatccccggcatcgc
tggccggaaaatccggcagaaggttga
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