Granulibacter bethesdensis NIH3.1: GbCGDNIH3_0159
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Entry
GbCGDNIH3_0159 CDS
T03155
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gbc
Granulibacter bethesdensis NIH3.1
Pathway
gbc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GbCGDNIH3_0159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbc03400
]
GbCGDNIH3_0159
Enzymes [BR:
gbc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GbCGDNIH3_0159
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GbCGDNIH3_0159
DNA repair and recombination proteins [BR:
gbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GbCGDNIH3_0159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF6127
Motif
Other DBs
NCBI-ProteinID:
AHJ61908
UniProt:
A0AAN0VES0
LinkDB
All DBs
Position
182927..183829
Genome browser
AA seq
300 aa
AA seq
DB search
MKQGMRFMPELPEVETVMRGLRARLEGRRIVRAEVRRPDLRFPLPPGLAARLTGAYVRDF
RRRGKYILMRLEGGDSLLIHLGMSGRFVLRAPADTTLPEGHEPERHEHVSMMAEDGWIAA
LVDPRRFGMMDLVPTAAEDAHRLLSSMGPEPLEDAFCLSGLEKAFAGRRTAVKLALLDQR
IVAGLGNIYVSEALFRAGINPLRAAGDLSRAELRRLIPAIRETLTEAIAAGGSSLRDYVQ
PDGELGYFQHAWKVYGRAGQPCEHCPGLSAGCQGIVQIVQGGRSTYFCPCTQQQAGKQAG
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
ttgaaacaaggaatgcgcttcatgccggaactgccggaagttgaaaccgtgatgcgtggc
ctgcgtgcgcgtctggaggggcgtcgtatcgtgcgggcggaggtcaggcggcctgatctg
cgttttccactgccacccggtctggcggcccggctgacgggtgcttatgtgcgggatttc
cgtcggcgtggaaaatacatcctgatgcgtctggagggcggtgacagcctgttgattcac
ctgggcatgtccggtcgtttcgtgctgcgtgcacccgccgacacgaccttgccggagggg
catgaaccggagcggcatgaacacgtctccatgatggctgaggatggctggatcgcggcg
ctggtcgacccgaggcggttcggcatgatggatctggtgccgactgcggcggaggatgcg
catcgtctgctctcctccatggggcctgagccgctggaagatgcattttgtctctctggt
ctggaaaaggcatttgccggtcgccgcacggcggtgaaactggctctgctggatcaacgg
atcgtggccgggctgggcaatatctatgtttcggaggccctgttccgggccgggatcaat
ccgctgcgggccgcgggggacctctcccgggctgaactccggcggttgatccccgcgatt
cgcgagacgttgacggaagcgattgccgcaggtggctcctccctgcgtgactatgtgcag
ccggatggtgaactgggctatttccagcatgcatggaaagtctatggccgtgcggggcag
ccttgcgaacattgtcccggcctgtccgccggctgtcaggggatcgttcagatcgtgcag
ggcggtcgaagcacgtatttctgtccctgtacccagcaacaggcggggaaacaggcggga
tga
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integrated database retrieval system
