Granulibacter bethesdensis NIH3.1: GbCGDNIH3_0701
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Entry
GbCGDNIH3_0701 CDS
T03155
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gbc
Granulibacter bethesdensis NIH3.1
Brite
KEGG Orthology (KO) [BR:
gbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gbc03016
]
GbCGDNIH3_0701
Enzymes [BR:
gbc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GbCGDNIH3_0701
Transfer RNA biogenesis [BR:
gbc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GbCGDNIH3_0701
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AHJ62488
UniProt:
A0AAN0RCQ1
LinkDB
All DBs
Position
complement(794583..795233)
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AA seq
216 aa
AA seq
DB search
MITQFMADKTIHLHRHDLPPSLDIGPMIAIDTETMGLNHHRDRLCLIQISAGDGHAHLVQ
IVPERLGGKGADCPNLKRLLSNPACVKLMHYARFDVGILQNALGIAMSNVKCTKIAAKLV
RTFTDRHGLKDLCRDLLGVEISKQQQSSDWGAPELTPEQMAYAASDVLYLHALWNRLEGL
LIREDRLALAEACFAFLPARARLDYLGYDEPDIFSH
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
gtgatcacacagttcatggccgataaaaccattcatcttcatcggcacgaccttccccct
tcattggatatcggccccatgatcgccattgatactgaaacgatggggcttaatcatcac
cgggaccggctgtgcctgatccagatttccgccggagatggtcatgcccaccttgtgcag
atcgtgccggagcgattgggcggcaaaggtgccgattgccccaacctcaaacggttgctc
agcaaccctgcctgcgtaaaactgatgcattacgcacggttcgatgtcggcattttgcag
aacgcactaggcatcgcgatgtccaacgtcaaatgcaccaagatcgccgccaagctggtc
cgtacctttacagatcgccatggcctgaaagatctgtgccgcgatcttctgggggtagag
atcagcaagcagcagcagagctccgattggggcgcacctgaactgacgccagagcagatg
gcctatgccgcctccgatgttctgtatctgcatgcactatggaaccggctggaaggatta
ctgatccgggaggataggcttgctctggctgaagcatgttttgcctttctgcctgccaga
gcacgactggattatctgggttatgatgagccggatattttttcgcactga
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