Granulibacter bethesdensis NIH3.1: GbCGDNIH3_1221
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Entry
GbCGDNIH3_1221 CDS
T03155
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
gbc
Granulibacter bethesdensis NIH3.1
Pathway
gbc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GbCGDNIH3_1221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbc03400
]
GbCGDNIH3_1221
DNA repair and recombination proteins [BR:
gbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GbCGDNIH3_1221
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GbCGDNIH3_1221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
BCA_ABC_TP_C
AAA_16
AAA_25
DnaJ_CXXCXGXG
AAA_23
nSTAND1
AAA_21
Motif
Other DBs
NCBI-ProteinID:
AHJ63022
UniProt:
A0AAN0RDV9
LinkDB
All DBs
Position
1352038..1355001
Genome browser
AA seq
987 aa
AA seq
DB search
MIYCCYPCGTFPEHFPCRCCFCPLLSCRIDRMAGSIRVRGAREHNLKNVDIDIPRDSLTV
ITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLELAGKPDVDSIEGLSPAISIEQK
TTSRNPRSTVGTVTEIHDYMRLLWARAGVPYSPATGLPIEAQTISQMVDRVLDMPSGTRL
LLLAPVVRDRKGEYRKELAELQRRGFTRVKVDGELYDIGDVPALNRKLKHTLEAVVDRVV
VKAGLQQRLADSFETALGLSDGIVYAEDATSGERTVFSSRFACPVSGFTIEEIEPRLFSF
NSPHGACPACDGLGVENFFDPDLVVPNERLSLKEGAIAAWSGAASPYYDQTLMALAAHYG
VDPRTAWEELPDICRNGILFGTEEDVSITYKDGVRSYTVKRPFEGVIRNLERRLRETDSV
WVREELSRYQAEKPCHVCDGARLKPEALAVKINSKDIAAASDLSIRDALPWFQSVLASLT
PQRAEIARRILREIEDRLQFLLDVGLDYLTLARSSATLSGGESQRIRLASQIGSGLTGVL
YVLDEPSIGLHQRDNDRLLGTLRRLKSLGNTVLVVEHDEDAIRAADHLIDMGPGAGVNGG
HVIACGTPQEVAKHPDSLTGAYLSGRAAIAVPQQRRPIQKKRMLTLVGAKGNNLKNVTAH
FPLGTFTCITGVSGGGKSTLVVDTLYKLTARRLMGAAQVPAPYERIEGLELLDKIIDIDQ
SPIGRTPRSNPATYTDLFAPIREWFAELPESRARGYKAGRFSFNVKGGRCEACQGDGVLK
IEMHFLPDMFVTCDTCKGKRYNRETLEVKFRDKSIADVLDMSVDEAVPYFSAANRIHDRL
KILQQVGLGYVKLGQQATTLSGGEAQRVKLSKELARRATGRTLYILDEPTTGLHFEDVRK
LLDVLHTLVDQGNTVIVIEHNLEVIKTADWILDLGPEGGDGGGRIVAEGTPEQIAASPES
HTGRFLAPLLAKPTASPRRINRKRAAE
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
gtgatttactgttgctatccatgcggaacttttccagaacattttccttgtcgttgctgt
ttctgccccctcctctcgtgtcggattgatcgtatggccggttccattcgtgtgcgcggt
gcccgcgagcacaacctgaaaaacgttgatattgatattccacgggatagcctgacggtt
atcaccggactgtccggctccggcaaatcatcactggccttcgatacgatctatgccgaa
gggcagcggcgttacgtcgaaagcctgtccgcttatgcaagacagtttctggaactggcg
ggcaaaccggatgtagacagtatcgagggcctttcccccgctatctcgatcgagcagaag
accaccagccgcaatccccgctctacggtcggtacggtaacggaaatccacgattatatg
cgtcttctctgggcgcgcgcaggcgttccctactctcccgcgaccgggctgccgatcgag
gcccagaccatcagccagatggtggaccgggtgctggacatgccatcgggcacgaggttg
ttgctgctggcgccggtggtgcgcgaccgtaagggggagtaccgcaaggaactcgccgag
ttgcagcgccgtggctttacacgcgtcaaggtggacggggaattatacgatattggcgat
gtccctgccctgaaccggaagctcaagcatacgctggaagcagtggtggatcgcgtggtg
gtcaaggcgggactgcaacagcgcctggccgacagtttcgaaaccgcgttggggctgtct
gacggaatcgtctacgccgaagatgcgaccagcggagaacgcacggtcttttcctctcgc
ttcgcctgcccggtcagtggctttaccattgaggagatcgagccacgcctgttcagcttc
aactccccacacggtgcctgcccggcctgtgacgggctgggggtcgagaatttcttcgat
cccgatctggtcgtgccgaatgaacgactcagcctcaaggagggtgccattgcggcatgg
tccggtgcggccagcccttactacgatcaaacgctgatggctctggctgcgcattatggc
gtcgatccacgtaccgcgtgggaagaactgccagatatatgtcgcaacggcattctattc
ggcaccgaagaggatgtttccattacctataaggacggggtgcgcagctatacggtcaaa
cggccattcgaaggtgtcatccgcaatctggaacgccgtctgcgcgagaccgacagcgta
tgggtgcgggaggaactgtcgcgttatcaggccgaaaaaccttgccatgtctgtgatggt
gcccggctcaagccggaagctctggccgtcaagatcaatagcaaggacattgcagcggcc
tcggatttgtcgatccgcgatgcgctgccctggttccaatccgtgctggccagtctgacc
ccgcaacgggccgaaatcgcccggcgcattctgcgtgagatcgaggaccggcttcagttt
ctgctggatgttggactcgattatctgacccttgcacgatcctccgccaccctgtccggg
ggagagagccaacgcatccggctggcaagccagatcggctctggcctgacaggggtgctc
tatgtgctcgacgaaccgtccatcgggttgcaccagcgtgataatgaccggctgctcggc
acgctccggcgactgaaatcactcggcaacactgtgctggtggtcgagcatgacgaagat
gcaatccgtgctgccgaccatctgattgatatggggccgggcgcgggcgtcaatgggggg
catgtgatcgcctgcggcaccccgcaggaggtcgcgaaacatcccgatagtctgacaggc
gcctatctgtcaggccgtgccgcgatcgccgttccccagcagcgccgtccaattcagaag
aaacggatgctgacgctggtgggagcaaagggcaataacctcaaaaatgtcacggcgcat
tttccattgggaacttttacctgcatcaccggcgtgtccggtggcgggaaatctacgttg
gtggttgatacgctctacaagctgaccgcaagacggttgatgggggcggctcaggtgcct
gcgccgtatgagcggatcgagggactggaactgctcgacaagatcatcgacatagaccag
tccccgatcggacgcacgccgcgttccaatccggccacctatactgatctgttcgccccg
atccgggaatggttcgccgaattgccggaaagccgggcacgaggctacaaggcaggccga
ttcagcttcaatgtcaaaggcggtcgctgtgaagcatgtcagggcgacggggtgctgaaa
atcgagatgcacttcctgccggatatgttcgtcacctgcgatacttgtaaaggcaaacgg
tataatcgtgagacgctggaagtaaaattccgcgacaaatccattgccgacgtgctggat
atgtcggtcgatgaggcggtgccctatttcagtgccgcaaaccgtatccatgaccggttg
aaaatcctgcaacaggtcgggttgggatatgtaaagctgggtcagcaggccaccacgctt
tctggcggtgaggcacagcgtgtgaaattgtccaaggaactcgcccgccgtgcgaccggg
cggacgctgtatatcctcgacgaacccaccaccggcctgcatttcgaggatgtccgcaag
ctgctggatgtgctgcacacgctggtcgatcagggcaatacggtcatcgtgatcgaacac
aatctggaagtcatcaagacagcggactggattctggatctcggtccggaaggcggggat
ggcggcggacgaattgtggcggaaggaacgcctgaacagattgcggcctctcccgaaagc
cataccgggcgttttctggctccgcttcttgcgaaaccaaccgcgtccccacgccggatc
aaccgcaagcgggccgctgaataa
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integrated database retrieval system
