Granulibacter bethesdensis NIH3.1: GbCGDNIH3_1965
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Entry
GbCGDNIH3_1965 CDS
T03155
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gbc
Granulibacter bethesdensis NIH3.1
Pathway
gbc03030
DNA replication
gbc03410
Base excision repair
gbc03420
Nucleotide excision repair
gbc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GbCGDNIH3_1965
03410 Base excision repair
GbCGDNIH3_1965
03420 Nucleotide excision repair
GbCGDNIH3_1965
03440 Homologous recombination
GbCGDNIH3_1965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbc03032
]
GbCGDNIH3_1965
03400 DNA repair and recombination proteins [BR:
gbc03400
]
GbCGDNIH3_1965
Enzymes [BR:
gbc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GbCGDNIH3_1965
DNA replication proteins [BR:
gbc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GbCGDNIH3_1965
DNA repair and recombination proteins [BR:
gbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GbCGDNIH3_1965
NER (nucleotide excision repair)
GGR (global genome repair) factors
GbCGDNIH3_1965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DprA_N
HHH_5
Beta-prop_NOL10_N
HHH
Motif
Other DBs
NCBI-ProteinID:
AHJ63851
UniProt:
A0AAN0VGF4
LinkDB
All DBs
Position
2217509..2220310
Genome browser
AA seq
933 aa
AA seq
DB search
MSTSPTPDAALPDSTHLILIDGSGFIFRAFHALPPMTRPDGTPVNAVFGFTNMLARFLKD
HVGTHLAVIFDAGRTTFRNRLYPAYKAHRPEPPPELIPQFALIREATAAFGVPAIELADW
EADDLIASYARAAVTRGGRVTIVSSDKDLMQLIQPGVEMQDPIKQKTIGPAEVMEKFGVT
PEKMIDVQALMGDSVDNVPGVPGIGPKTAAQLINEYGDLDGVLAALETMKPSKRRDNLVA
HAEDARISRQLVALSQDAPLPVPITDLSVRQPDAAVLQDWLNAQGFRSTAARLGLETGGS
PSPTSPAAGRTAAAAPAAASPLPPSSAPFGPYETVTTVEALEPWLAEARKAGLFAMDTET
DGLDAQQCRLVGISLAIAPGKACYIPLDHQTTLDQPVRQPAIAEIAAALNPLLADPTVLK
IFQNGKFDLAVLRRHQMPVIAPIDDTMLISYAQEAGAHGHGMDELSVLHLGHSPISYDQV
TGTGRNRLPFPQVPIDKATAYAAEDADVTLRLWHALRPRLRETKSLTIYEQMERPLVPVL
CTMEAAGIRVDEAELRRMSADFALRMADMETEIHQLAGRPFNLASPKQLGEVLFDEIGLT
GSKRSKTGAWGTDAATLQAIADESGHALPARILDWRQLAKLKSTYADALVEDVNPRTGRV
HTSFQMAITTTGRLSSNEPNLQNIPIRTEEGSRIRRAFIADPGHVLISADYSQIELRLLA
HVADIPQLKDSFANGEDIHARTASEVFGVPMQGMDSLTRRRAKAINFGIIYGISAFGLAR
SLAISPGEARQYIDAYFARYPGIRDYMERTKEEARINGFVVTPFGRRCWVPGIADRNPAR
RGYAERQAINAPLQGGAADIIKRAMVRLPAMLTDNGFQTRMLLQVHDELLFEAPEAEAEA
VARLVTTTMQDAARISVPLVVETGIGTNWGEAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacctccccgacgccggacgcagcgcttccggacagcacccatctgatcctgatc
gacggatcgggattcattttccgcgccttccacgccttgccgccaatgaccagaccggat
ggaacaccggtcaatgccgtcttcggctttaccaacatgctggcgcggtttctgaaagat
cacgtcggcacgcatctggcggtgattttcgatgccgggcggaccactttccgcaatcgg
ctctatccggcctacaaggcgcatcgtccggagccaccgccggagctgatcccgcaattc
gcgctgatacgggaggccacggccgccttcggcgtccctgcgatcgaactggccgactgg
gaagcggatgatttgatcgcctcctatgcccgtgctgcggtcacacggggcgggcgtgtc
accatcgtctcctccgacaaggatctgatgcagctgatccagccgggcgtggagatgcag
gatccgatcaaacaaaaaaccatcggccccgccgaggtgatggaaaaattcggcgtgacg
ccggagaaaatgatcgacgtgcaggcattgatgggggacagcgtcgataatgttccgggt
gttcccgggattggccccaaaaccgctgcccagctgatcaatgagtatggcgatctcgac
ggtgttctggctgcgctggagacaatgaagcccagcaaacgccgggacaatctcgttgcc
catgccgaggatgcgcggatttcccgtcaactggtggcactgagtcaggatgccccgcta
ccagtgccgatcaccgatctgagtgttcgtcagccggatgctgccgttcttcaggactgg
ctgaatgcgcaggggttccgcagcaccgcggcaaggctcgggcttgagacaggcggcagc
ccttcccccacctctcccgctgccggcagaactgcggctgccgcaccggcagcagcctcc
cccctccccccttcctccgcaccgttcggcccttatgaaaccgtcacgaccgtcgaagcg
ctggagccatggctggcggaagcacggaaagccgggctgttcgccatggataccgaaacc
gacgggctggatgcacaacaatgcaggcttgttggcatttcgctcgccattgcgccggga
aaggcctgctatatcccgctcgatcaccagaccacactggatcagccggtgcgccagccg
gccattgcggagattgccgctgcgctcaatccgcttctggccgatccgacagttctgaaa
atcttccagaacggcaagttcgatctggccgtgctgcgccgtcatcagatgccggtcatc
gccccgatcgacgacaccatgctgatttcctatgctcaggaagccggtgcgcacgggcat
ggcatggacgagctttccgtcctgcatctgggacacagcccgatttcctatgatcaggtg
accggcaccgggcgtaaccgtctgcccttcccgcaggttcccatcgacaaggccaccgcc
tatgccgccgaggatgccgatgtcacgctgcgtctgtggcatgcgctgcggccccgcctg
cgcgagaccaaatccctgaccatctatgagcagatggagcggccgttagtgccggtgctc
tgcaccatggaagcagccggcattcgggtcgatgaagccgaattacggcgtatgtcggca
gatttcgccctgcgcatggcagacatggagacagaaattcatcagttggcaggccgcccg
ttcaacctcgccagcccgaaacagctgggagaggtgctgttcgacgaaatcggcctgacc
ggcagcaagcgatccaaaaccggcgcatggggcacggatgcggccacgttgcaggcgatt
gcggatgaaagcggtcatgccctgcctgcccgtatcctggactggcgccaactggccaag
ctgaaatccacctatgccgatgcgctggtggaggatgtcaatccgcggaccgggcgggtt
catacctcgttccagatggcgatcaccaccacggggcgtctgtcctccaacgagccgaat
ctgcaaaatatcccgatccgcacggaggaaggcagccgcatccggcgggctttcatcgcc
gatcccggccatgtgctgatcagcgccgattacagccagatcgaactgcgtctgctggcg
catgtcgccgatattccgcagttgaaggacagcttcgccaacggcgaggatattcatgcc
cgcaccgccagcgaagtgttcggcgtgccgatgcagggcatggattccctgacccgcaga
cgggcgaaggcgatcaatttcggcattatttacggcatcagcgcctttggtctggcacgg
tcgctggccatttctccgggcgaggcgcgtcagtatatcgatgcttattttgcccgctat
cccggcatccgggactacatggaacggaccaaggaagaagcacgaatcaacggtttcgtg
gtcacgcccttcggacgccgctgctgggtgccgggcatcgccgaccgcaacccggcaagg
cgcggttatgcggaacggcaggcgatcaatgccccgcttcagggaggagccgccgatatc
atcaaacgcgccatggtccggctacccgccatgctcacagataacggttttcagacccgc
atgctgcttcaggtgcatgacgaattgctgttcgaggccccggaggccgaagccgaagct
gttgcccgtctggtcaccacgaccatgcaggatgctgcccggatttcagtgccgttggtg
gtggaaaccgggatcgggaccaactggggcgaggctcactga
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