Granulibacter bethesdensis NIH3.1: GbCGDNIH3_2009
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Entry
GbCGDNIH3_2009 CDS
T03155
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
gbc
Granulibacter bethesdensis NIH3.1
Brite
KEGG Orthology (KO) [BR:
gbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbc03400
]
GbCGDNIH3_2009
Enzymes [BR:
gbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GbCGDNIH3_2009
DNA repair and recombination proteins [BR:
gbc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
GbCGDNIH3_2009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AHJ63897
UniProt:
A0AAN0VGI1
LinkDB
All DBs
Position
2262832..2265774
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AA seq
980 aa
AA seq
DB search
MRITSIPPDWPFLDTVAAAWLGEGEQSPLDTADGIILLPTRRAARALADAFLRISNGRPL
LLPRITALGALDEIPLALHGALDLPPAVDTPRRLAELTRLILALPDPALSADSAWMLARE
LAKLLDEAARAGIDLATVLPDAVDPSFAAHWQTTLTFLQIVTRAWPDWLTEEGLTDPAAR
QAALLRIQATHWQDHPPATRLWAAGISGAAPAEAMLLKTIARLKQGLVILPGLDMTMPEE
AWGMLEASHPQAGMRDLLAMMDARRDDVAPWGLAPPPSRSGERSRLLHQALLPAEALTLW
RETTPPSSESVFRLEAEDEQQEAVAIALILRDALETPGRRAALITPDRGLAVRVSTELAR
FGVIADDSAGEPLAETPPALFLRLLAETVRSGFSPVSLLSLLKHPMTALGMDRLMTLHAA
RGLEQHALRGPRPPPGLSGLRAVLEAGKTEAAALIDRLEQVLHPLIDLVAQEKLAPHDYL
RALLTAGEAVAASDTHSGAERLWALEEGEALAVLLAETLPALTVLPPQPPDTLPGLFDAV
LEGIAVRSRRALRRFGENDAEHPRLFIWGLLEAQLQHVDVAVLGGLSEGVWPPATDPGPW
MSRPMRSRVGLPSAEQIIGQAAHDFVQAACSASVAILSCPARREGAPVVTARWLARIDAL
LKGHGKHLPTHPATAWAGMLDQPERPAPVRPPRPCPPRRSRPRSLSVTEIGRWLSDPYRV
YAERILRLKPLDPLEQDTDAADFGMIVHDGMQCFLENAARQWPGGDPGADLPAALRTAFR
VALDRHNPRPALRSWWLPRLDRIAAWVATREQRDTKIHTETSGIWHLSAFPGGPFTLKGR
ADRIEIRRDGRIRLLDYKTGTVPSAPAILSGEAPQLPLEAAMMKAGAFPDVPAQYPSELV
YWRLSGGRVAGEEIILGRKAPAAWAEEQAQLAAEKLRDLVIRYDDPDFPYLAQPFAPGHG
PMDAYAHLARVPEWADGDES
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcacctccatcccgccggactggccgtttctcgacactgtcgcggctgcctgg
ctgggtgagggtgagcaaagcccgcttgatacggctgatggcatcatcctgctgccgaca
cggcgcgctgcgcgggcgctggccgatgcgtttctgcgtatctccaacggccgcccgctg
ctgttgccacgtatcacggcactcggcgcgctggacgaaataccgctggccctgcatggc
gcactggatctgccgcccgccgtggacacgccccgtcgtctggcggagctgacacggctg
attctggcattaccagacccggccctgtcggcggacagtgcatggatgctggccagagaa
ctggccaaactgctggacgaagccgcccgcgccgggattgatcttgcaaccgtcctgcct
gatgcagtcgatccatctttcgcagcgcactggcagacgactctgacctttcttcagatc
gtcacccgtgcctggccggactggctgacggaggaagggctgaccgatccggcggcgcgg
caggccgccctgctgcggattcaggcgacgcactggcaggatcatccgcctgcgacacgt
ctctgggcggcggggatttccggcgcggccccggccgaagcgatgctgctgaaaaccatc
gccagactgaagcagggcctggtgatcctgcccggcctcgacatgaccatgccggaggaa
gcatggggcatgctggaggcctctcatccacaggcggggatgcgcgacctgctggccatg
atggatgcaaggcgggatgatgtagcaccatggggattggcgcccccgccttcccgctct
ggtgaacgctcccgtcttctgcatcaggcgctgcttcctgccgaagccctgacgctctgg
cgcgaaaccacgccgccttcctccgaatccgtgttccgtctggaagcggaagatgaacag
caggaggccgtcgccatcgcgctgatcctgcgggatgcgctggagacaccgggacggcgg
gccgcgctgatcacgccggatcgcgggctggcggtgagagtgtcaaccgagttggcccgc
ttcggggtcatcgccgatgacagcgccggcgaaccgcttgccgaaacaccccctgccctc
tttctgcgcctgctggcggaaacggtgcggagcggtttctctccggtctcgttgctatcc
ctgctgaaacatcccatgacagcgctgggcatggaccgtctgatgacgctgcatgcggcg
cgcgggctggaacagcacgccctgcgcggcccgcgtcctccgccgggcctgtccgggctg
cgtgcggtcctcgaagccggaaaaacggaagccgccgctctgatcgaccggctggaacag
gtgctgcatcccctgatcgacctcgtagcacaggaaaagcttgcgccccatgactacctg
cgcgccttgctgaccgccggggaagccgtggccgccagcgatactcactccggcgccgag
cgtctgtgggcgttggaggaaggggaggcgctggccgtcctgctggcggagacgctgccc
gccctgacggtgctgccgccgcaaccgcccgatacgctgccgggcttgttcgacgcggta
ctggaaggcattgccgtccgcagccgccgtgccctgcgccgcttcggcgagaacgatgcc
gaacatccgcgcctgtttatctggggcctgctggaagcacagcttcaacatgtggatgtc
gctgtgctgggcggtctgagcgaaggcgtatggccccctgccacggatcccggcccatgg
atgagccgcccgatgcgcagtcgggtcgggctgccgagcgctgagcaaatcatcggtcag
gcggcccatgatttcgtgcaggcggcatgcagcgcctccgtggcgatcctgtcctgcccc
gcccggcgggaaggtgcgcctgtcgtcacagcacgctggctggcacggatcgacgctctg
ctgaagggacatgggaaacatctgccgacccaccccgccaccgcctgggccggaatgctg
gatcaaccggaacggcctgccccggtcaggccgcctcgcccctgcccgccccgccggtca
cgtcctcgcagcctgagtgtgacggaaatagggcgctggctgagcgatccttatcgagtc
tatgcggagcgtatcctgaggctgaaaccgcttgatccgctggaacaggatactgatgcc
gccgatttcggcatgatcgtgcatgatggcatgcagtgttttctggaaaatgccgcccgg
caatggcccggcggggaccccggtgcggacctgccggccgccctgcgcacggcattccgg
gtcgcgctggaccgccacaatcctcgcccggccctgcgcagttggtggctgccgcgtctc
gaccggatcgcggcctgggtggcaacccgggagcagcgggatacgaaaatccataccgaa
acctccggcatctggcatttatcggctttcccgggcggccccttcacgctgaaaggccgc
gccgaccggatcgagatcaggcgggatggcaggatccgtctgctcgattacaaaaccggc
acggttccctctgccccggcgattctgagcggagaggctccgcaactgccgctggaagcc
gcgatgatgaaggcgggggccttcccggatgtaccggcacaatatccgtccgaactggtg
tactggcggctcagtggcggccgtgtcgccggcgaggaaatcattctcggcaggaaagcc
cccgccgcatgggccgaagaacaggcgcaactggcggccgagaagctgcgcgatctggtc
atacgctatgacgatccggattttccctatctggcacaaccttttgcccccggccatggg
cccatggatgcctatgcgcatctggcccgcgtgccggaatgggcggatggtgacgagtca
tga
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