Granulibacter bethesdensis NIH3.1: GbCGDNIH3_2284
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Entry
GbCGDNIH3_2284 CDS
T03155
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gbc
Granulibacter bethesdensis NIH3.1
Pathway
gbc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gbc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GbCGDNIH3_2284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbc03021
]
GbCGDNIH3_2284
Transcription machinery [BR:
gbc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GbCGDNIH3_2284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
RRM_ESF1
Fib_alpha
Motif
Other DBs
NCBI-ProteinID:
AHJ64188
UniProt:
A0AAN0VGQ9
LinkDB
All DBs
Position
complement(2543069..2545033)
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AA seq
654 aa
AA seq
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MATKQAATAESASSEQDVETTLLDTQSASVKRLIARGKERGYITFDELNAVLPSEQNSSE
QIEDVMANLSEMGIQVVESEETEESGEPAARAERAEETEDEERSGNVDEESLGRTDDPVR
MYLREMGSVELLSREGEIAIAKRIEAGRDMMIGGLCESPLTFRAIITWHERLKAGEMLLR
DIIDLEATQGGPPPGVVEGGEEGAEEGEADAEAFTPPPPPEESEDGDDADGIGMSLSALE
EKLKPETLQRFEEIEAIYKKLSKMQSKRLDSFTSGEEVTARSEKTYEKMRDELVAKVSEV
RLHNGRVEELVLQLKQLNQRLTGLEGQLLRLAESCKVPRDSFLEQHRNHELEPNWLERVS
TLPGKAWKNFSARYPQEVGQIRGRIGEVAADAGLPIPEFLRVYKTVNRGERDSARAKKEM
IEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI
TRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPQPEELAEKLGMPLEKVRKVLK
IAKEPISLETPIGDEEDSHLGDFIEDKAAIIPLDAAIQANLREATTRVLSSLTPREERVL
RMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDD
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaagcaggctgctaccgcggagagcgcgtcgtcggaacaggatgtggaaacc
accctgctcgacacccagtccgcatcggtgaaacgcctgatcgcgcgtggcaaggagcgg
gggtacatcacctttgacgagctgaacgcggttctgccatcggagcagaacagctccgaa
cagatcgaggacgtgatggccaatctcagcgagatgggcattcaggtcgtcgagagtgaa
gaaaccgaggaaagcggcgaacccgccgcccgcgcagaacgggcggaagaaaccgaggat
gaggaacgctccgggaatgtggacgaggaaagcctcggccgcacggatgaccctgtccgc
atgtatctgcgcgagatgggcagcgtggagctgctgtcccgcgagggcgaaatcgccatc
gccaagcgtatcgaggccggtcgcgacatgatgatcggcggactgtgcgaaagcccgctg
acattccgcgccatcatcacctggcatgaacgtctcaaggccggtgagatgctgctgcgt
gacatcatcgatctggaagccacgcagggcggtccgccgcccggtgtggtggaaggtggt
gaagaaggtgccgaggaaggcgaggcagatgccgaagccttcactccgccgcccccgcct
gaagaatccgaggatggagacgatgccgacggtatcggcatgtctctctccgcgcttgag
gaaaagctgaagccggagaccctgcaacggttcgaggaaatcgaggcgatctacaaaaaa
ctgtccaagatgcaatcaaagcgtctcgacagctttacctccggcgaggaagtcaccgcg
cgctcggaaaaaacctatgaaaagatgcgtgatgagctggtcgcaaaggtcagcgaggtg
cggctgcataacggacgcgtggaggagctggtcctccagctcaagcagctcaaccagcgt
ctgaccggactggaagggcagctgctgcgtctggcggaaagctgtaaggtgccgcgtgat
tccttcctggaacagcaccgtaatcatgagctggagccgaactggctggagcgtgtttcc
accctgcccggcaaggcatggaagaatttttcggcccgctacccgcaggaagtcggccag
atccggggccggatcggagaggttgcggcggatgccggactgccgatccccgaattcctg
cgtgtttacaaaaccgtcaatcgcggtgaacgcgatagcgcccgcgccaagaaggagatg
atcgaggccaatctgcgtctggtgatctctattgccaagaaatacaccaatcgcggtttg
cagttcctcgatctgattcaggaaggcaatatcggcctgatgaaggcggtggacaaattc
gaatatcgccgcggctacaagttcagcacctatgcgacatggtggattcgtcaggcgatc
acgcgttccattgccgatcaggcccgcaccatccgcatcccggtgcatatgatcgagacg
atcaacaagctggtacgcaccagccgtcagatgctgcatgaaatcgggcgtgaaccgcag
ccggaggaactggccgaaaagctcggcatgccgctggaaaaggtgcggaaagttctgaaa
attgcgaaggaacccatcagcctcgaaaccccgatcggtgatgaggaagacagccatctg
ggcgatttcatcgaggacaaggcggcgatcattccactggatgccgccattcaggccaat
ctgcgtgaagcaaccacccgcgttctgtccagcctgaccccgcgtgaggaacgtgtgctg
cgcatgcgcttcgggattggcatgaatacggatcacacgcttgaagaagtcggccagcag
ttcaacgtgacgcgtgaacgcatccgtcagatcgaggccaaggcgctccgcaagctgaaa
caccccagccgcagccgtaagctgcgctcattcctggacgattga
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