Granulibacter bethesdensis CGDNIH1: GbCGDNIH1_0283
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Entry
GbCGDNIH1_0283 CDS
T00392
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gbe
Granulibacter bethesdensis CGDNIH1
Pathway
gbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GbCGDNIH1_0283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbe03019
]
GbCGDNIH1_0283
03009 Ribosome biogenesis [BR:
gbe03009
]
GbCGDNIH1_0283
Enzymes [BR:
gbe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GbCGDNIH1_0283
Messenger RNA biogenesis [BR:
gbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GbCGDNIH1_0283
Ribosome biogenesis [BR:
gbe03009
]
Prokaryotic type
rRNA processing factors
GbCGDNIH1_0283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RseA_C
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ABI61181
UniProt:
Q0BVH1
LinkDB
All DBs
Position
327914..330763
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AA seq
949 aa
AA seq
DB search
MSCHAPQALARIRLRLCVPFATIHRHNVMPGGARRSRISRVCTGAHYSMTKKMLIDASHA
EETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAFVEYGGNRHGFLAFS
EIHPDYYQIPVADRQRLLAMQEEEAREEEEAEEAEFSAAEARRSASRPLNNAREVIQADS
EQPEASDPQEDGADHGVQDESAADFSGEAGDEGSVPASAGEGDDQEESRQASRPARQKED
RERRSPRFLRNYKIQEVIKRRQILLIQVVKEERGNKGAALSTYISLAGRYCVLMPNSPRG
GGVSRKITSATDRRRLKDIIGALEIPRGMGIIVRTAGGNRPKAEIMRDCEYLLRLWDDIR
DITLRSSAPALIHEEASLIKRAIRDVYTSTIEEVLVDGEEGWRAARDIMRMLMPSHARKV
ICWNADKERAGQPLFAHYQVESQLDAILAPNVSLKSGGYLVINQAEALVAIDVNSGRSTK
ERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKEALKNDR
ARIQVGQISSFGLLEMSRQRLRPSLTETSMITCPHCNGLGLVRTTEGASVHVLRAIEEEG
ARRRYAEIMVHAAADVAFYILNNRRDFLATLESRFGMKVLFSADTQFSGSQLRIEKIRAR
AMEDVVRTPLIGVADPQPSVAGDLYDFADASDGFATFEAAPVAALPVAVQAEPVGTAEEG
NNGGRLPSAEGDSEPGPDDGERRRRRRRRRRGNRRNDGAENGMDARSEQDENGNPVEEGE
GVRHGDANTSALPVETTELTVAGVASKETSAETQGDAIDGTQAVSGEFGDEFAEDSRPRR
RGRRGGRGRRQPAQANGHDAGEVAYTGPTPADPFGQQPLDVFDVMDGIEQPMIRDGKVDQ
GSRSERHPDLVPEPVVVSEEQAEPYIAPPIQPVVIEDTAPRARRGWWKR
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatgccatgcgcctcaggcgctggcccggatacggttgcggctgtgcgtgcccttc
gcgacgatacaccgacacaacgtcatgcccggtggagcgcgccgttcgcgcatatcccgg
gtgtgtaccggagctcattattcaatgaccaaaaaaatgctcatcgacgccagccatgcg
gaagaaacccgcgtggtggtgatggatggaaaccggcttgaagatttcgacgttgaggca
gcgtcccgtaaacagatcaaagggaatatttatctcgccaaagtcgtccgggtagagccg
agccttcaggccgctttcgtcgaatatggcggtaaccggcatggctttctggctttcagt
gaaatccatcccgactactatcagatccctgttgccgaccgtcagcgcctgctcgccatg
caggaagaggaagcacgtgaggaggaggaggctgaggaagccgaattttccgccgctgag
gcgcgtcgttccgcctcccgaccgttgaacaacgctcgggaggtcatccaggcggattca
gaacagcccgaagcatccgatccgcaagaggacggggccgatcatggggtgcaggatgaa
tccgccgccgatttttctggagaggccggggatgaggggagcgttcctgcctccgccggg
gaaggcgatgatcaggaggagagccgtcaggcctcgcgcccggcccgccagaaagaagat
cgtgagcgccgctctccccgttttctgcgcaattataaaattcaggaagtcatcaagcgc
cgccagatcctgctgattcaggtggtgaaggaagagcggggcaataaaggggccgcgctg
agcacttatatttctcttgctggccgctattgcgtgttgatgccgaactcgccgcgtggt
ggtggcgtgtcacgcaagattacctccgccacggatcgccgccgtctgaaagacattatc
ggcgcgctggagatcccgcgcggcatgggcatcatcgtccgcacggctggcgggaaccgc
ccgaaggcggagatcatgcgggactgcgaatacctgttgcgcctgtgggatgatatccgc
gacatcaccctgcgttcatccgcgcccgcgctgattcacgaggaagccagcctgatcaag
cgggcgatccgtgatgtctataccagtacgattgaggaagtgctggtcgatggggaagaa
ggttggcgggctgcgcgcgatatcatgcgcatgctgatgccgtcccatgcccgcaaggtg
atctgctggaacgctgacaaggaacgtgccggacagcccctgttcgctcattatcaggtc
gaatcgcaacttgatgccattctggcgccgaatgtttcgctgaaatccgggggctatctg
gtaatcaaccaggccgaggctctggtggcgatcgacgtcaattccggtcgttccacgaag
gagcgggggattgaggaaacagccctccgcaccaatctggaagcggcggatgaggtcgcc
cgtcagctgcgtctgcgtgatcttgccggtctgatcgtgatcgatttcatcgacatggaa
agccgcaagcataacggcatggtcgagcggcggctgaaggaagcgttgaagaacgaccgt
gcccgcattcaggtcggccagatcagcagctttggcctgctggaaatgagccgccagcgt
ctgcgcccgtccctgaccgaaaccagcatgatcacctgcccgcattgcaatgggcttggt
ctggtccgcaccactgagggtgcttccgtccatgtgctgcgggcgatcgaggaagagggc
gcacgccgtcgctatgccgagatcatggtgcacgccgctgccgatgtggcgttctacatt
ctgaacaatcgccgggattttctggccacgctggaatcccgcttcggcatgaaggtgctt
ttctccgctgatacgcagttcagtggttcccagttgcggattgagaaaatccgtgcccgt
gcgatggaagacgtggtccggactccgctgatcggcgttgctgatccgcagccgagcgtt
gcgggtgatctgtatgatttcgctgatgcctctgacggttttgcgacgttcgaggcggcc
ccggtggcggcattgcccgtggctgtgcaggcagaaccggttggaaccgccgaggaaggt
aacaacggtggcaggctgccttccgcggaaggcgattctgaacccgggccggatgatgga
gagcgccgccgtcgccgtcgtcgtcgtcgtcgtggcaatcgccgtaatgacggggccgag
aatgggatggatgcccggtcggagcaggatgagaacggcaatccggtcgaagagggtgag
ggtgtcaggcacggggatgccaatacctctgcgctgcccgtggaaaccacagagctgaca
gtggccggagttgcttccaaagaaaccagtgcggaaacacagggcgacgccatcgatggt
acgcaggctgtctccggtgaatttggtgatgagtttgcggaggattcccgtccgcgccgc
cgtggccgccgtggcgggcgtgggcggcgtcagcctgctcaggcgaatggccatgatgcg
ggggaagtggcctataccggtcccaccccggctgatccgttcggtcagcagccgctggat
gtattcgacgtgatggatggtattgagcaaccgatgatccgtgacgggaaagtggatcag
ggctcccgctccgaacgccatcctgacctggtgcctgagccggttgtcgtgtctgaggag
caggctgagccctatattgcgccccccatccagccagtggtgattgaggataccgctcca
cgggccagacgaggctggtggaaacgctga
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