Granulibacter bethesdensis CGDNIH1: GbCGDNIH1_0375
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Entry
GbCGDNIH1_0375 CDS
T00392
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
gbe
Granulibacter bethesdensis CGDNIH1
Brite
KEGG Orthology (KO) [BR:
gbe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gbe03016
]
GbCGDNIH1_0375
Enzymes [BR:
gbe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
GbCGDNIH1_0375
Transfer RNA biogenesis [BR:
gbe03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
GbCGDNIH1_0375
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ABI61273
UniProt:
Q0BV79
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All DBs
Position
complement(425720..426358)
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AA seq
212 aa
AA seq
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MTMADVTGHRPALLWSCQPDCLAHAAPATPSPGRAPMRLFVGLDLPWILKDELYGIAYGL
PGARWISPENYHLTLRFIGDVPGHRADELDLALSTLRARGFSLVLTGIGIFERAGRSTLY
VGVEKNPQLDHLQNKIETGLQRVGLPPERRRFMPHVTLARLDGTADNRLASYVQSHNLFR
TDPIPVEHFTLFSSQLGKEQSVYTVEADYALA
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
ttgaccatggctgatgtgaccgggcaccgtcctgcgttactctggtcctgccagccggat
tgcctcgcgcatgctgcccccgccaccccttcccccgggagagcacccatgagactgttt
gtcgggcttgatcttccctggattctgaaagatgaactctacgggattgcctacggtctg
ccgggggcacgctggatttcaccggaaaattaccatctgaccctgcgcttcatcggcgac
gtaccgggccatcgcgccgatgagcttgatctggccctgtccaccttgcgggcacgtggt
ttctctctggtgctgacagggatcggtattttcgagcgggccggacgctccaccctgtat
gtcggcgtggagaagaatccgcagctggaccatcttcagaacaagatcgaaaccgggtta
cagcgcgtgggcctgcccccagaacgccgccgcttcatgccccatgtcacactggcacgc
ctggatggcacggcagacaatcgtctggcttcctatgtccagagccataatctgttccgt
accgaccccatcccggtggagcacttcaccctgttcagttctcaactgggcaaggaacag
tcggtttacaccgtggaagcggattacgctctggcatag
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