Granulibacter bethesdensis CGDNIH1: GbCGDNIH1_0549
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Entry
GbCGDNIH1_0549 CDS
T00392
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gbe
Granulibacter bethesdensis CGDNIH1
Pathway
gbe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gbe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GbCGDNIH1_0549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbe03021
]
GbCGDNIH1_0549
03400 DNA repair and recombination proteins [BR:
gbe03400
]
GbCGDNIH1_0549
Enzymes [BR:
gbe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GbCGDNIH1_0549
Transcription machinery [BR:
gbe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GbCGDNIH1_0549
DNA repair and recombination proteins [BR:
gbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GbCGDNIH1_0549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ABI61447
UniProt:
Q0BUQ5
LinkDB
All DBs
Position
632351..636514
Genome browser
AA seq
1387 aa
AA seq
DB search
MNELMKILGQGGQSLSFDQIKIQMASPEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIVCEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMVDLTLKELEKILYFENYVVLEPGLTDLKLHQLLTEEQLLNKQDEFGDDAFRAG
IGAEAIKSVLEGIDIDEDKVRLRAELKETTSETKRKKLVKRLKLIEAFAESGAKPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
EMKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVTTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLETPEFRNTPDDKAQAFGTLGEIEA
ALHARTVTLHTKIRARLHTVDDQGSPIRVRVVTTPGRMLIAQILPRHPNVPFALINKQLT
KKNVSDVIDAVYRHCGQKECVIFADRLMGLGFGQAAKAGISFGKDDLIIPAEKQEMIEKT
AGEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVAGAMMKEISKQELGRPINSVWMMS
HSGARGSPAQMRQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLEYFNSTHGARKGLADT
ALKTANSGYLTRRLVDVAQDCIIVENDCGTERGLTVRAVMDGGEVVSSLSERILGRTLSE
DVLDPTTNKILYPRNTLIEEEHAEKIEKAGIEVVKIRSVLTCESTVGVCGHCYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSVEASHDGIVTVKNRNVV
LNSQNVAIVMSRNCEIVLADEKGRERARYRVPYGARLLTDEGAQVTRAQKLAEWDPYTLP
IITERAGKVEYLDLLDGVTLVERMDEVTGLTSKVVVDYKQNARGVDLRPRLQLKDESGDV
VRLSNNTDARYFLSPDSILSVENGAEVNAGDVLARIPREGSKTRDITGGLPRVAELFEAR
RPKDHAVIAETDGRVEFGKDYKAKRRIIVKNDETGEETEYLIPKGKHVSVQEGDFVRLGD
PLVDGPRVPHDILKVLGVEALSDYLVNEIQDVYRLQGVKINDKHIEVIVRQMLQKVEILD
PGDTMYLIGEQVDRLEFEAENRKREREGERPAVAMPVLQGITKASLQTQSFISAASFQET
TRVLTEAATAGKVDTLNGLKENVIVGRLIPAGTGSVMNRLRRIASGQDEAKGVGQETPRL
SGQEAAE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagctgatgaagatcctgggtcagggcggccagtcgctgagcttcgaccagatc
aagattcagatggccagcccggagcagattcgctcctggtcctatggcgaaatcaagaag
ccggaaacgatcaactaccgcaccttcaagccggagcgggacggtctgttctgtgcacgt
attttcggtccgatcaaggactatgaatgcctgtgcggcaagtacaagcggatgaagttc
cgcggcatcgtgtgcgagaagtgcggcgttgaagtgacgctcgccaaggtgcgccgcgag
cgtatgggccatatcgagctggcctccccggttgcccatatctggttcctcaaaagcctg
cccagccgtattggcctgatggtcgatctgactctgaaagagctggaaaaaatcctgtat
ttcgagaactacgttgttctcgaacccggtttgaccgatctgaagctgcatcagcttctg
accgaagagcagttgctgaacaaacaggatgagttcggcgacgatgcgttccgcgccggg
atcggggcggaggcgatcaagtcggttctggaagggatcgatatcgacgaggacaaggtc
cgcctgcgcgccgagctgaaagagacgacctccgaaaccaagcgcaagaagctggtcaag
cgcctcaagctgatcgaggcgtttgcggaaagcggtgccaagccggaatggatgattctg
gatgtagtgccggttattccgccggagctgcgtccgctggtgccactggatggaggccgt
ttcgcgacctctgacctgaacgatctgtatcgccgtgtcatcaaccgtaataaccgcctg
aagcgcctgatcgagctgcgcgcgccggacattatcgtccgcaatgaaaagcgcatgttg
caggaaagcgtggatgcgctgttcgataacggtcgccgtggtcgcgccattaccggtgcc
aacaagcgtccgctgaagtcgctgtccgatatgctgaagggcaagcagggccggttccgt
cagaacctgctcggcaagcgcgtcgactattccggtcgttcggtgatcgtcgtggggccg
gagatgaagctccatcagtgcggcctgccgaagaagatggctctggaactgttcaagccg
ttcatctactcgaagctggaaaaatacggtcacgccaccaccatcaaggctgccaagcgc
atggtggaaaaagagcgtccggaagtgtgggatatcctcgaagaggtgatccgcgagcat
ccggtcatgttgaaccgtgcgccgaccctgcatcgtcttggtattcaagcgttcgagccg
gtgctgatcgaaggcaaggcgatccagctgcaccctctggtgaccaccgcgttcaatgcc
gacttcgacggtgaccagatggctgtgcacgtgccgctgagccttgaggctcagctggaa
gcgcgcgtgctgatgatgtccaccaacaacatcctcagccccgccaacggcaagccgatc
atcgtgccgagtcaggatatcgtgctgggtctgtactatctgtcgctggaaacgccggag
ttccgcaatacgccggatgacaaggcgcaggctttcggcacgctgggcgagatcgaggcg
gcgctgcatgccagaaccgtgaccctgcacaccaagatccgtgcgcgtctgcatacagta
gacgatcagggcagcccgatccgcgtgcgcgtggtgaccactccgggccgcatgttgatc
gcccagattctgccgcgccatcccaacgtgcctttcgcgctgatcaacaagcagttgacc
aagaagaacgtctccgacgtgatcgacgcggtctatcgccattgcggccagaaagagtgc
gtgatcttcgccgatcgtctgatgggactcggtttcggccaggccgcgaaggccggcatt
tccttcggcaaggatgatctgatcatcccggcggaaaagcaggagatgatcgaaaagacc
gccggagaggtgaaggaattcgaacagcagtatcaggatggtctgattaccgctggcgaa
cgctataacaaggtggtcgatgcctggtcgcgctgcaccgatgaggtggcgggcgcgatg
atgaaagagatttccaagcaggaactcggtcgtcccatcaattccgtgtggatgatgagc
cattccggtgcgcgtgggtctccggcccagatgcgtcagcttgccggtatgcgtggcctg
atggcgaagccgtccggtgaaatcatcgagcagccgattatcgcgaacttcaaggaaggc
ctgtcggttctggagtatttcaactccacccacggtgcccgtaaggggttggccgatacg
gcgctgaagaccgcgaactccggctatctgacccgccgtctggtggacgtggcgcaggac
tgcatcatcgtcgagaacgattgcggcactgaacgcggcctgaccgtgcgtgcggtgatg
gatggcggtgaggtggtctccagcctgtccgagcgtattctcggtcgcaccctcagcgag
gatgtgctcgatccgaccaccaacaagatcctgtatccgcgcaatacgctgatcgaggaa
gaacacgccgagaagatcgagaaggccgggatcgaggtggtgaaaatccgctcggttctg
acctgcgagagtacggtcggcgtctgtggtcactgctatggccgcgatctggcccgtggc
acgccggtgaatatcggtgaggcggtcggcgtgattgccgcccagtccatcggtgaacct
ggtacgcagctgacgatgcgcaccttccatatcggtggcgccgcgcagcgtggtgccgag
cagtccagcgtcgaagccagccatgatggcatcgtgacggtgaagaaccggaacgtggtg
ctgaacagccagaacgtcgccatcgtgatgtcgcgtaactgcgaaatcgtgctggcggat
gaaaaaggccgtgaacgggcgcgttaccgtgtgccgtatggtgcccgtctgctgacggat
gaaggcgcccaggtgacccgtgcccagaagctggcggaatgggatccctacactctgccg
atcattacggagcgtgctggtaaggtcgaatatctggacctgctggatggcgtgacgctg
gttgagcggatggacgaagtaaccggcctgacttccaaggtggtggtggactacaagcag
aacgcgcgtggtgttgatctgcgtccgcgactccagttgaaggacgagagcggcgatgtc
gtgcgtctctccaacaatacggatgctcgttacttcctctctcctgactcgattctgtcg
gtggagaacggtgccgaggtgaatgccggcgatgtgctggcccgtattccgcgtgaaggc
agcaagacccgcgacattacgggtggtctgccgcgcgtggcggagctgttcgaagcccgt
cgtcccaaggatcacgcggtcatcgccgagaccgatggtcgggttgaattcggcaaggat
tacaaggccaagcgccgtatcatcgtgaagaacgacgaaaccggcgaggaaaccgagtat
ctgatcccgaagggcaagcacgtctcggtgcaggagggcgacttcgtgcgtcttggcgat
ccgctggtggacggtccgcgcgtgccccatgatatcctgaaggtgctgggtgtcgaggcg
ctgtcggattatctggtgaacgaaatccaggacgtctatcgactccagggtgtgaagatc
aacgacaagcacattgaggtgatcgttcgccagatgctgcagaaggtcgaaattctcgat
ccgggcgatacgatgtatctgatcggcgagcaggtggaccggctggagttcgaggcagag
aatcgcaagcgtgagcgtgagggcgagcgtcctgcggtggccatgccggttcttcaggga
atcaccaaagcgtccttgcagacgcagagcttcatcagcgcagcctccttccaggagacc
acacgcgtgctgaccgaggctgcgacggcaggcaaggtcgataccctgaatggtctgaag
gaaaacgtgattgtcgggcgtctgatcccggccggcacggggtccgtaatgaaccgtctg
cgccggattgcctccggtcaggacgaggccaagggagtcgggcaggaaacgccccgactc
tctggtcaggaagcggctgaataa
DBGET
integrated database retrieval system
