Granulibacter bethesdensis CGDNIH1: GbCGDNIH1_0803
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Entry
GbCGDNIH1_0803 CDS
T00392
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gbe
Granulibacter bethesdensis CGDNIH1
Pathway
gbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GbCGDNIH1_0803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbe03019
]
GbCGDNIH1_0803
03016 Transfer RNA biogenesis [BR:
gbe03016
]
GbCGDNIH1_0803
Enzymes [BR:
gbe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GbCGDNIH1_0803
Messenger RNA biogenesis [BR:
gbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GbCGDNIH1_0803
Transfer RNA biogenesis [BR:
gbe03016
]
Prokaryotic type
tRNA degradation factors
GbCGDNIH1_0803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
ABI61701
UniProt:
Q0BU01
LinkDB
All DBs
Position
complement(924731..927169)
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AA seq
812 aa
AA seq
DB search
MARRLKPAKGSAAKGPSGGKAGRKSSRPSSQAVRPVPGHEPGTMPSREAIRRFVAEASGR
VGKREIAKAFGLGAADKLHLRDLLKDMASEGNLAPAGHKRFMPAGGSMLPHAKGSSHLPE
VAVILITGTDRDGDAVGRPAEWPREAGPPPSVLMHPEPRGRPALAPGEKVLARLRPIGHG
RYEGRTIKRLGGDTPRPILGVYRLSEPVTLVPRSTRTSHAARQMLARQNASTAQPEGRVV
PTDRRSKAEWLVPAGEEGGAEPGDIVRAMPLPHTGYGLKPARIIEKLGKIGDARSVSLIC
IETHDIPQIFPDEALSEARKARAVPLEKREDLRDIPLITIDGEDARDFDDAVFAERAEND
GFRLIVAIADVAHYVRPGSALDREAFKRGNSCYFPDRVVPMLPEALSNGWCSLRPDEDRG
CLFVEMMINAGGGKIRHRFGRGLMRSTARRTYEEVQQAHEAGDETLDALYGAYHALIKAR
TARGTLDLDLPERKVILNEAGSVDAIIPRPRLDSHRLIEEFMVLANVAAAEELERLHRPC
MYRVHAPPSDEKTEALRGFLDSFGISLPPAGQIHPRDLDHILKQVAGTEHAALINETMLR
SQSQAEYNPDNIGHFGLALSRYAHFTSPIRRYADLLVHRALIAGLKLGVGSLEDDEASRF
VDIAEHITATERRAAMAERDAIDRYLAAFMADRVGARFAARISGVTRFGLFITVEENGAS
GIVPISSLPDDFWIHDEREQALIGRNSRAVWRLAQSVTVRLAEATPITGGLVFNLLPGAS
SSASSRPDSTDRTNTQDRFSSRKRGSPGRSRR
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgtcgtctcaaaccggccaaaggatcagccgccaaaggaccatctgggggaaag
gctggcaggaaatcctcccgcccatcctcgcaggcggtccgaccggtccccggccatgaa
cccggcacgatgccgagccgggaggccattcgccgttttgtggcggaagcctccggccgg
gtcggcaaacgggagattgccaaggcattcggactgggagccgccgataagctgcacctg
cgtgatctgctgaaagacatggcctcggagggcaatctcgcccctgccgggcataagcgc
ttcatgcctgccggggggagcatgctccctcatgccaaagggagttcccatctgccggaa
gtcgccgtgatcctcatcaccggcacggatcgggatggcgacgcggtcggccgcccggcc
gagtggcctcgggaagccgggcctcccccctccgtcctcatgcacccggagcctcgggga
cgtccggcgcttgcacctggggaaaaagtgctggcccggctgcgcccgatcggccatggc
cgctatgaaggccgcactatcaagcggctgggtggcgatacaccgcgccccattctgggg
gtttaccggttgtcggaacccgtcaccctggtcccacgctcgacccggacctcccatgcc
gcaagacagatgctggcacgacagaatgcctccacagcacaaccggaaggcagggtggtg
ccgacagatcgccgctccaaggccgaatggcttgttcctgccggcgaggaagggggggcg
gaaccgggtgacattgtgcgtgccatgcctctgccccatacagggtacgggctgaaaccg
gcccggatcattgaaaagctgggcaagatcggggatgcccgctcggtcagcctgatctgc
atcgaaacccacgatattccccagattttccccgacgaggccctttccgaagcccgaaaa
gcccgcgccgttccactggaaaagcgggaggatttgcgggacattcctctcatcaccatt
gatggcgaggatgctcgggacttcgacgatgccgtttttgccgaacgggcagagaatgac
ggattccgtctgatcgtggccattgccgatgtggcgcattacgtacgccccggctcggca
ctggaccgggaagcgttcaaacgcggcaattcctgttacttcccggatcgcgtcgtgccg
atgctaccggaagcgctctcaaatggctggtgcagtctgcgcccggacgaggatcgcggc
tgcctgttcgtggagatgatgattaatgccggcggtggcaagatccgccaccgcttcgga
cgcgggctgatgcgcagtaccgctcgccgcacctatgaggaggtgcagcaggcccatgag
gcaggcgatgagacactcgatgcgctctacggcgcctaccacgctctgatcaaggcccgc
actgcgcgcggtacgctcgaccttgatctgccggagcgcaaggtgatcctcaacgaggcc
ggatcagtagacgctatcattccgcgcccccgtctcgacagccaccggctgatcgaggaa
ttcatggtgctggccaatgtcgccgcagcggaggagctggaacggctgcatcgtccctgc
atgtatcgtgtccatgcaccgccgagcgacgaaaagaccgaggccctgcgcggttttctg
gacagtttcggcatttccctgcctcccgccgggcaaattcatcctcgcgatctggaccat
attctgaagcaggtggccgggacggaacatgccgcgctgatcaacgagaccatgctgcgc
agccaatctcaggcggaatataatcctgacaatatcggccatttcgggctggcgctcagt
cgctatgcccatttcaccagcccgatccgccgctatgccgatcttctggtgcaccgtgcc
ctgattgccgggttaaaactgggtgttggcagtctggaggacgatgaagccagccgcttc
gtcgacatcgccgagcatattaccgcaaccgaacgccgtgcggccatggcggaacgcgat
gccatcgaccgttacctggccgccttcatggccgacagggttggcgcccgctttgccgcc
cgcatttccggtgtcacccgcttcggcctgttcatcacagtcgaggaaaacggtgccagc
gggattgtcccgatttcctctctccccgacgatttctggattcatgatgagcgtgagcag
gccctgatcggccgtaacagccgggccgtatggcgtctggcgcagagcgtcactgtgcgc
cttgcggaagccacgccgattaccggggggctggtgttcaacttgctgccgggtgcttca
tcttctgcgtcctcccgcccagacagcacagaccggacaaatactcaggaccggttcagc
agccgcaagcgtggcagtccgggacgatccagacggtga
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